Mol Biol Evol: Most-Cited Full-Text Articles
http://mbe.oxfordjournals.org/
Most-cited rankings are recalculated at the beginning of the month and are based on citations to articles on this journal site from articles in other HighWire-hosted journals.2009-10-17<![CDATA[The neighbor-joining method: a new method for reconstructing phylogenetic trees]]>
http://mbe.oxfordjournals.org/cgi/content/short/4/4/406?rss=1&ssource=mfc
Jul 1, 1987; 4:406-425 Original Articles]]>N Saitou, M Nei1987-07-01Oxford University Press<![CDATA[Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions]]>
http://mbe.oxfordjournals.org/cgi/content/short/3/5/418?rss=1&ssource=mfc
Sep 1, 1986; 3:418-426 Original Articles]]>M Nei, T Gojobori1986-09-01Oxford University Press<![CDATA[MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0]]>
http://mbe.oxfordjournals.org/cgi/content/short/24/8/1596?rss=1&ssource=mfc
Aug 1, 2007; 24:1596-1599 ]]>Koichiro Tamura, Joel Dudley, Masatoshi Nei, Sudhir Kumar2007-08-01Oxford University Press<![CDATA[Quartet Puzzling: A Quartet Maximum-Likelihood Method for Reconstructing Tree Topologies]]>
http://mbe.oxfordjournals.org/cgi/content/short/13/7/964?rss=1&ssource=mfc
Sep 1, 1996; 13:964-969 Original Articles]]>K Strimmer, A von Haeseler1996-09-01Oxford University Press<![CDATA[Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees]]>
http://mbe.oxfordjournals.org/cgi/content/short/10/3/512?rss=1&ssource=mfc
May 1, 1993; 10:512-526 Original Articles]]>K Tamura, M Nei1993-05-01Oxford University Press<![CDATA[Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference]]>
http://mbe.oxfordjournals.org/cgi/content/short/16/8/1114?rss=1&ssource=mfc
Aug 1, 1999; 16:1114-1116 Letters to the Editor]]>H Shimodaira, M Hasegawa1999-08-01Oxford University Press<![CDATA[A codon-based model of nucleotide substitution for protein-coding DNA sequences]]>
http://mbe.oxfordjournals.org/cgi/content/short/11/5/725?rss=1&ssource=mfc
Sep 1, 1994; 11:725-736 Original Articles]]>N Goldman, Z Yang1994-09-01Oxford University Press<![CDATA[Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population]]>
http://mbe.oxfordjournals.org/cgi/content/short/12/5/921?rss=1&ssource=mfc
Sep 1, 1995; 12:921-927 Original Articles]]>L Excoffier, M Slatkin1995-09-01Oxford University Press<![CDATA[Slipped-strand mispairing: a major mechanism for DNA sequence evolution]]>
http://mbe.oxfordjournals.org/cgi/content/short/4/3/203?rss=1&ssource=mfc
May 1, 1987; 4:203-221 Review Articles]]>G Levinson, GA Gutman1987-05-01Oxford University Press<![CDATA[Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis]]>
http://mbe.oxfordjournals.org/cgi/content/short/17/4/540?rss=1&ssource=mfc
Apr 1, 2000; 17:540-552 Original Articles]]>J. Castresana2000-04-01Oxford University Press<![CDATA[Estimating Absolute Rates of Molecular Evolution and Divergence Times: A Penalized Likelihood Approach]]>
http://mbe.oxfordjournals.org/cgi/content/short/19/1/101?rss=1&ssource=mfc
Jan 1, 2002; 19:101-109 Original Articles]]>Michael J. Sanderson2002-01-01Oxford University Press<![CDATA[Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution]]>
http://mbe.oxfordjournals.org/cgi/content/short/15/5/568?rss=1&ssource=mfc
May 1, 1998; 15:568-573 Original Articles]]>Z Yang1998-05-01Oxford University Press<![CDATA[Estimating Synonymous and Nonsynonymous Substitution Rates Under Realistic Evolutionary Models]]>
http://mbe.oxfordjournals.org/cgi/content/short/17/1/32?rss=1&ssource=mfc
Jan 1, 2000; 17:32-43 Original Articles]]>Ziheng Yang, Rasmus Nielsen2000-01-01Oxford University Press<![CDATA[A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum-Likelihood Approach]]>
http://mbe.oxfordjournals.org/cgi/content/short/18/5/691?rss=1&ssource=mfc
May 1, 2001; 18:691-699 Original Articles]]>Simon Whelan, Nick Goldman2001-05-01Oxford University Press<![CDATA[Codon-Substitution Models for Detecting Molecular Adaptation at Individual Sites Along Specific Lineages]]>
http://mbe.oxfordjournals.org/cgi/content/short/19/6/908?rss=1&ssource=mfc
Jun 1, 2002; 19:908-917 Original Articles]]>Ziheng Yang, Rasmus Nielsen2002-06-01Oxford University Press<![CDATA[Intraspecific nuclear DNA variation in Drosophila]]>
http://mbe.oxfordjournals.org/cgi/content/short/13/1/261?rss=1&ssource=mfc
Jan 1, 1996; 13:261-277 Original Articles]]>EN Moriyama, JR Powell1996-01-01Oxford University Press<![CDATA[Median-joining networks for inferring intraspecific phylogenies]]>
http://mbe.oxfordjournals.org/cgi/content/short/16/1/37?rss=1&ssource=mfc
Jan 1, 1999; 16:37-48 Original Articles]]>HJ Bandelt, P Forster, A Rohl1999-01-01Oxford University Press<![CDATA[Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites]]>
http://mbe.oxfordjournals.org/cgi/content/short/10/6/1396?rss=1&ssource=mfc
Nov 1, 1993; 10:1396-1401 Original Articles]]>Z Yang1993-11-01Oxford University Press<![CDATA[BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data]]>
http://mbe.oxfordjournals.org/cgi/content/short/14/7/685?rss=1&ssource=mfc
Jul 1, 1997; 14:685-695 Original Articles]]>O Gascuel1997-07-01Oxford University Press<![CDATA[Statistical tests for detecting gene conversion]]>
http://mbe.oxfordjournals.org/cgi/content/short/6/5/526?rss=1&ssource=mfc
Sep 1, 1989; 6:526-538 Original Articles]]>S Sawyer1989-09-01Oxford University Press<![CDATA[Application of Phylogenetic Networks in Evolutionary Studies]]>
http://mbe.oxfordjournals.org/cgi/content/short/23/2/254?rss=1&ssource=mfc
Feb 1, 2006; 23:254-267 ]]>Daniel H. Huson, David Bryant2006-02-01Oxford University Press<![CDATA[Estimating the rate of evolution of the rate of molecular evolution]]>
http://mbe.oxfordjournals.org/cgi/content/short/15/12/1647?rss=1&ssource=mfc
Dec 1, 1998; 15:1647-1657 Original Articles]]>JL Thorne, H Kishino, IS Painter1998-12-01Oxford University Press<![CDATA[Phylogenetic test of the molecular clock and linearized trees]]>
http://mbe.oxfordjournals.org/cgi/content/short/12/5/823?rss=1&ssource=mfc
Sep 1, 1995; 12:823-833 Original Articles]]>N Takezaki, A Rzhetsky, M Nei1995-09-01Oxford University Press<![CDATA[A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes]]>
http://mbe.oxfordjournals.org/cgi/content/short/2/2/150?rss=1&ssource=mfc
Mar 1, 1985; 2:150-174 Review Articles]]>WH Li, CI Wu, CC Luo1985-03-01Oxford University Press<![CDATA[Population growth makes waves in the distribution of pairwise genetic differences]]>
http://mbe.oxfordjournals.org/cgi/content/short/9/3/552?rss=1&ssource=mfc
May 1, 1992; 9:552-569 Original Articles]]>AR Rogers, H Harpending1992-05-01Oxford University Press<![CDATA[A Nonparametric Approach to Estimating Divergence Times in the Absence of Rate Constancy]]>
http://mbe.oxfordjournals.org/cgi/content/short/14/12/1218?rss=1&ssource=mfc
Dec 1, 1997; 14:1218-1231 Original Articles]]>MJ Sanderson1997-12-01Oxford University Press<![CDATA[A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome]]>
http://mbe.oxfordjournals.org/cgi/content/short/11/5/715?rss=1&ssource=mfc
Sep 1, 1994; 11:715-724 Original Articles]]>SV Muse, BS Gaut1994-09-01Oxford University Press<![CDATA[Codon usage and tRNA content in unicellular and multicellular organisms]]>
http://mbe.oxfordjournals.org/cgi/content/short/2/1/13?rss=1&ssource=mfc
Jan 1, 1985; 2:13-34 Review Articles]]>T Ikemura1985-01-01Oxford University Press<![CDATA[Recovering Evolutionary Trees under a More Realistic Model of Sequence]]>
http://mbe.oxfordjournals.org/cgi/content/short/11/4/605?rss=1&ssource=mfc
Jul 1, 1994; 11:605-612 Original Articles]]>PJ Lockhart, MA Steel, MD Hendy, D Penny1994-07-01Oxford University Press<![CDATA[Markov Chasin Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees]]>
http://mbe.oxfordjournals.org/cgi/content/short/16/6/750?rss=1&ssource=mfc
Jun 1, 1999; 16:750-759 Original Articles]]>B Larget, DL Simon1999-06-01Oxford University Press<![CDATA[The age and evolution of non-LTR retrotransposable elements]]>
http://mbe.oxfordjournals.org/cgi/content/short/16/6/793?rss=1&ssource=mfc
Jun 1, 1999; 16:793-805 Original Articles]]>HS Malik, WD Burke, TH Eickbush1999-06-01Oxford University Press<![CDATA[PAML 4: Phylogenetic Analysis by Maximum Likelihood]]>
http://mbe.oxfordjournals.org/cgi/content/short/24/8/1586?rss=1&ssource=mfc
Aug 1, 2007; 24:1586-1591 ]]>Ziheng Yang2007-08-01Oxford University Press<![CDATA[Asymmetric substitution patterns in the two DNA strands of bacteria]]>
http://mbe.oxfordjournals.org/cgi/content/short/13/5/660?rss=1&ssource=mfc
May 1, 1996; 13:660-665 Original Articles]]>JR Lobry1996-05-01Oxford University Press<![CDATA[Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection]]>
http://mbe.oxfordjournals.org/cgi/content/short/22/4/1107?rss=1&ssource=mfc
Apr 1, 2005; 22:1107-1118 ]]>Ziheng Yang, Wendy S.W. Wong, Rasmus Nielsen2005-04-01Oxford University Press<![CDATA[The Evolution of Transcriptional Regulation in Eukaryotes]]>
http://mbe.oxfordjournals.org/cgi/content/short/20/9/1377?rss=1&ssource=mfc
Sep 1, 2003; 20:1377-1419 Review Articles]]>Gregory A. Wray, Matthew W. Hahn, Ehab Abouheif, James P. Balhoff, Margaret Pizer, Matthew V. Rockman, Laura A. Romano2003-09-01Oxford University Press<![CDATA[A statistical test for detecting geographic subdivision]]>
http://mbe.oxfordjournals.org/cgi/content/short/9/1/138?rss=1&ssource=mfc
Jan 1, 1992; 9:138-151 Original Articles]]>RR Hudson, DD Boos, NL Kaplan1992-01-01Oxford University Press<![CDATA[Comparative Evolutionary Analysis of Chalcone Synthase and Alcohol Dehydrogenase Loci in Arabidopsis, Arabis, and Related Genera (Brassicaceae)]]>
http://mbe.oxfordjournals.org/cgi/content/short/17/10/1483?rss=1&ssource=mfc
Oct 1, 2000; 17:1483-1498 Original Articles]]>Marcus A. Koch, Bernhard Haubold, Thomas Mitchell-Olds2000-10-01Oxford University Press<![CDATA[Accuracy and Power of the Likelihood Ratio Test in Detecting Adaptive Molecular Evolution]]>
http://mbe.oxfordjournals.org/cgi/content/short/18/8/1585?rss=1&ssource=mfc
Aug 1, 2001; 18:1585-1592 Original Articles]]>Maria Anisimova, Joseph P. Bielawski, Ziheng Yang2001-08-01Oxford University Press<![CDATA[A Hidden Markov Model approach to variation among sites in rate of evolution]]>
http://mbe.oxfordjournals.org/cgi/content/short/13/1/93?rss=1&ssource=mfc
Jan 1, 1996; 13:93-104 Original Articles]]>J Felsenstein, GA Churchill1996-01-01Oxford University Press<![CDATA[Molecular phylogeny and divergence times of drosophilid species]]>
http://mbe.oxfordjournals.org/cgi/content/short/12/3/391?rss=1&ssource=mfc
May 1, 1995; 12:391-404 Original Articles]]>CA Russo, N Takezaki, M Nei1995-05-01Oxford University Press<![CDATA[Relationships between gene trees and species trees]]>
http://mbe.oxfordjournals.org/cgi/content/short/5/5/568?rss=1&ssource=mfc
Sep 1, 1988; 5:568-583 Original Articles]]>P Pamilo, M Nei1988-09-01Oxford University Press<![CDATA[Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method]]>
http://mbe.oxfordjournals.org/cgi/content/short/14/7/717?rss=1&ssource=mfc
Jul 1, 1997; 14:717-724 Original Articles]]>Z Yang, B Rannala1997-07-01Oxford University Press<![CDATA[A method for detecting positive selection at single amino acid sites]]>
http://mbe.oxfordjournals.org/cgi/content/short/16/10/1315?rss=1&ssource=mfc
Oct 1, 1999; 16:1315-1328 Original Articles]]>Y Suzuki, T Gojobori1999-10-01Oxford University Press<![CDATA[Prokaryotic Evolution in Light of Gene Transfer]]>
http://mbe.oxfordjournals.org/cgi/content/short/19/12/2226?rss=1&ssource=mfc
Dec 1, 2002; 19:2226-2238 Original Articles]]>J. Peter Gogarten, W. Ford Doolittle, Jeffrey G. Lawrence2002-12-01Oxford University Press<![CDATA[Contrasting Patterns of X-Linked and Autosomal Nucleotide Variation in Drosophila melanogaster and Drosophila simulans]]>
http://mbe.oxfordjournals.org/cgi/content/short/18/3/279?rss=1&ssource=mfc
Mar 1, 2001; 18:279-290 Original Articles]]>Peter Andolfatto2001-03-01Oxford University Press<![CDATA["Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons]]>
http://mbe.oxfordjournals.org/cgi/content/short/5/6/704?rss=1&ssource=mfc
Nov 1, 1988; 5:704-716 Original Articles]]>DC Shields, PM Sharp, DG Higgins, F Wright1988-11-01Oxford University Press<![CDATA[Reduced natural selection associated with low recombination in Drosophila melanogaster]]>
http://mbe.oxfordjournals.org/cgi/content/short/10/6/1239?rss=1&ssource=mfc
Nov 1, 1993; 10:1239-1258 Original Articles]]>RM Kliman, J Hey1993-11-01Oxford University Press<![CDATA[Performance of a Divergence Time Estimation Method under a Probabilistic Model of Rate Evolution]]>
http://mbe.oxfordjournals.org/cgi/content/short/18/3/352?rss=1&ssource=mfc
Mar 1, 2001; 18:352-361 Original Articles]]>Hirohisa Kishino, Jeffrey L. Thorne, William J. Bruno2001-03-01Oxford University Press<![CDATA[Large-scale search for genes on which positive selection may operate]]>
http://mbe.oxfordjournals.org/cgi/content/short/13/5/685?rss=1&ssource=mfc
May 1, 1996; 13:685-690 Original Articles]]>T Endo, K Ikeo, T Gojobori1996-05-01Oxford University Press<![CDATA[Determinants of Substitution Rates in Mammalian Genes: Expression Pattern Affects Selection Intensity but Not Mutation Rate]]>
http://mbe.oxfordjournals.org/cgi/content/short/17/1/68?rss=1&ssource=mfc
Jan 1, 2000; 17:68-70 Original Articles]]>Laurent Duret, Dominique Mouchiroud2000-01-01Oxford University Press