Molecular Biology and Evolution

Letters:

Daniel Garrigan, Zahra Mobasher, Tesa Severson, Jason A. Wilder, and Michael F. Hammer

Evidence for Archaic Asian Ancestry on the Human X Chromosome
MBE Advance Access published on October 13, 2004
Mol Biol Evol 2005 22: 189-192; doi:10.1093/molbev/msi013 [Abstract] [FREE Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Research Articles:

Carolin Kosiol and Nick Goldman

Different Versions of the Dayhoff Rate Matrix
MBE Advance Access published on October 13, 2004
Mol Biol Evol 2005 22: 193-199; doi:10.1093/molbev/msi005 [Abstract] [FREE Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Stéphane Aris-Brosou

Determinants of Adaptive Evolution at the Molecular Level: the Extended Complexity Hypothesis
MBE Advance Access published on October 13, 2004
Mol Biol Evol 2005 22: 200-209; doi:10.1093/molbev/msi006 [Abstract] [FREE Full Text] [PDF] [Request Permissions]  

Robert M. Jennings and Kenneth M. Halanych

Mitochondrial Genomes of Clymenella torquata (Maldanidae) and Riftia pachyptila (Siboglinidae): Evidence for Conserved Gene Order in Annelida
MBE Advance Access published on October 13, 2004
Mol Biol Evol 2005 22: 210-222; doi:10.1093/molbev/msi008 [Abstract] [FREE Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Sergei L. Kosakovsky Pond and Simon D. W. Frost

A Simple Hierarchical Approach to Modeling Distributions of Substitution Rates
MBE Advance Access published on October 13, 2004
Mol Biol Evol 2005 22: 223-234; doi:10.1093/molbev/msi009 [Abstract] [FREE Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

B. R. Holland, K. T. Huber, D. Penny, and V. Moulton

The MinMax Squeeze: Guaranteeing a Minimal Tree for Population Data
MBE Advance Access published on October 13, 2004
Mol Biol Evol 2005 22: 235-242; doi:10.1093/molbev/msi010 [Abstract] [FREE Full Text] [PDF] [Request Permissions]  

Tsuyoshi Tanaka, Yoshio Tateno, and Takashi Gojobori

Evolution of Vitamin B₆ (Pyridoxine) Metabolism by Gain and Loss of Genes
MBE Advance Access published on October 13, 2004
Mol Biol Evol 2005 22: 243-250; doi:10.1093/molbev/msi011 [Abstract] [FREE Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Andrew Gibson, Vivek Gowri-Shankar, Paul G. Higgs, and Magnus Rattray

A Comprehensive Analysis of Mammalian Mitochondrial Genome Base Composition and Improved Phylogenetic Methods
MBE Advance Access published on October 13, 2004
Mol Biol Evol 2005 22: 251-264; doi:10.1093/molbev/msi012 [Abstract] [FREE Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

F. Catania and C. Schlötterer

Non-African Origin of a Local Beneficial Mutation in D. melanogaster
MBE Advance Access published on October 13, 2004
Mol Biol Evol 2005 22: 265-272; doi:10.1093/molbev/msi014 [Abstract] [FREE Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Kevin Thornton and Manyuan Long

Excess of Amino Acid Substitutions Relative to Polymorphism Between X-Linked Duplications in Drosophila melanogaster
MBE Advance Access published on October 13, 2004
Mol Biol Evol 2005 22: 273-284; doi:10.1093/molbev/msi015 [Abstract] [FREE Full Text] [PDF] [Request Permissions]  

Yudai Okuyama, Noriyuki Fujii, Michio Wakabayashi, Atsushi Kawakita, Manabu Ito, Mikio Watanabe, Noriaki Murakami, and Makoto Kato

Nonuniform Concerted Evolution and Chloroplast Capture: Heterogeneity of Observed Introgression Patterns in Three Molecular Data Partition Phylogenies of Asian Mitella (Saxifragaceae)
MBE Advance Access published on October 13, 2004
Mol Biol Evol 2005 22: 285-296; doi:10.1093/molbev/msi016 [Abstract] [FREE Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Yong-Jin Won and Jody Hey

Divergence Population Genetics of Chimpanzees
MBE Advance Access published on October 13, 2004
Mol Biol Evol 2005 22: 297-307; doi:10.1093/molbev/msi017 [Abstract] [FREE Full Text] [PDF] [Request Permissions]  

Peter Wenzl, Laurie Wong, Kim Kwang-won, and Richard A. Jefferson

A Functional Screen Identifies Lateral Transfer of ß-Glucuronidase (gus) from Bacteria to Fungi
MBE Advance Access published on October 13, 2004
Mol Biol Evol 2005 22: 308-316; doi:10.1093/molbev/msi018 [Abstract] [FREE Full Text] [PDF] [Request Permissions]  

Cornelia Löhne and Thomas Borsch

Molecular Evolution and Phylogenetic Utility of the petD Group II Intron: A Case Study in Basal Angiosperms
MBE Advance Access published on October 20, 2004
Mol Biol Evol 2005 22: 317-332; doi:10.1093/molbev/msi019 [Abstract] [FREE Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Martijn Staats, Peter van Baarlen, and Jan A. L. van Kan

Molecular Phylogeny of the Plant Pathogenic Genus Botrytis and the Evolution of Host Specificity
MBE Advance Access published on October 20, 2004
Mol Biol Evol 2005 22: 333-346; doi:10.1093/molbev/msi020 [Abstract] [FREE Full Text] [PDF] [Request Permissions]  

Carolyne Bardeleben, Rachael L. Moore, and Robert K. Wayne

Isolation and Molecular Evolution of the Selenocysteine tRNA (Cf TRSP) and RNase P RNA (Cf RPPH1) Genes in the Dog Family, Canidae
MBE Advance Access published on October 20, 2004
Mol Biol Evol 2005 22: 347-359; doi:10.1093/molbev/msi022 [Abstract] [FREE Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Doriana Misceo, Maria Francesca Cardone, Lucia Carbone, Pietro D'Addabbo, Pieter J. de Jong, Mariano Rocchi, and Nicoletta Archidiacono

Evolutionary History of Chromosome 20
MBE Advance Access published on October 20, 2004
Mol Biol Evol 2005 22: 360-366; doi:10.1093/molbev/msi021 [Abstract] [FREE Full Text] [PDF] [Request Permissions]  

Silvestro G. Conticello, Cornelia J. F. Thomas, Svend K. Petersen-Mahrt, and Michael S. Neuberger

Evolution of the AID/APOBEC Family of Polynucleotide (Deoxy)cytidine Deaminases
MBE Advance Access published on October 20, 2004
Mol Biol Evol 2005 22: 367-377; doi:10.1093/molbev/msi026 [Abstract] [FREE Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

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