Molecular Biology and Evolution

Letters:

Roald Forsberg

Divergence Time of Porcine Reproductive and Respiratory Syndrome Virus Subtypes
MBE Advance Access published on July 6, 2005
Mol Biol Evol 2005 22: 2131-2134; doi:10.1093/molbev/msi208 [Abstract] [Full Text] [PDF] [Request Permissions]  

Alex Mira and Ravindra Pushker

The Silencing of Pseudogenes
MBE Advance Access published on July 13, 2005
Mol Biol Evol 2005 22: 2135-2138; doi:10.1093/molbev/msi209 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Sudhindra R. Gadagkar and Sudhir Kumar

Maximum Likelihood Outperforms Maximum Parsimony Even When Evolutionary Rates Are Heterotachous
MBE Advance Access published on July 13, 2005
Mol Biol Evol 2005 22: 2139-2141; doi:10.1093/molbev/msi212 [Abstract] [Full Text] [PDF] [Request Permissions]  

Jinling Huang, Ying Xu, and Johann Peter Gogarten

The Presence of a Haloarchaeal Type Tyrosyl-tRNA Synthetase Marks the Opisthokonts as Monophyletic
MBE Advance Access published on July 27, 2005
Mol Biol Evol 2005 22: 2142-2146; doi:10.1093/molbev/msi221 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Research Articles:

Gang Fang, Eduardo Rocha, and Antoine Danchin

How Essential Are Nonessential Genes?
MBE Advance Access published on July 13, 2005
Mol Biol Evol 2005 22: 2147-2156; doi:10.1093/molbev/msi211 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Kenji K. Kojima and Haruhiko Fujiwara

Long-Term Inheritance of the 28S rDNA-Specific Retrotransposon R2
MBE Advance Access published on July 13, 2005
Mol Biol Evol 2005 22: 2157-2165; doi:10.1093/molbev/msi210 [Abstract] [Full Text] [PDF] [Request Permissions]  

Zhenhua Guo and John W. Stiller

Comparative Genomics and Evolution of Proteins Associated with RNA Polymerase II C-Terminal Domain
MBE Advance Access published on July 13, 2005
Mol Biol Evol 2005 22: 2166-2178; doi:10.1093/molbev/msi215 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Tuo Shi, Thomas S. Bibby, Lin Jiang, Andrew J. Irwin, and Paul G. Falkowski

Protein Interactions Limit the Rate of Evolution of Photosynthetic Genes in Cyanobacteria
MBE Advance Access published on July 13, 2005
Mol Biol Evol 2005 22: 2179-2189; doi:10.1093/molbev/msi216 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

James L. Crainey, Clare F. Garvey, and Colin A. Malcolm

The Origin and Evolution of Mosquito APE Retroposons
MBE Advance Access published on July 20, 2005
Mol Biol Evol 2005 22: 2190-2197; doi:10.1093/molbev/msi217 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Brian P. Cusack and Kenneth H. Wolfe

Changes in Alternative Splicing of Human and Mouse Genes Are Accompanied by Faster Evolution of Constitutive Exons
MBE Advance Access published on July 27, 2005
Mol Biol Evol 2005 22: 2198-2208; doi:10.1093/molbev/msi218 [Abstract] [Full Text] [PDF] [Request Permissions]  

Wenli Gu, Yann Gibert, Thierry Wirth, Andrea Elischer, Wilhelm Bloch, Axel Meyer, Ortrud K. Steinlein, and Gerrit Begemann

Using Gene-History and Expression Analyses to Assess the Involvement of LGI Genes in Human Disorders
MBE Advance Access published on July 13, 2005
Mol Biol Evol 2005 22: 2209-2216; doi:10.1093/molbev/msi214 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Christophe Six, Alexandra Z. Worden, Francisco Rodríguez, Hervé Moreau, and Frédéric Partensky

New Insights into the Nature and Phylogeny of Prasinophyte Antenna Proteins: Ostreococcus tauri, a Case Study
MBE Advance Access published on July 27, 2005
Mol Biol Evol 2005 22: 2217-2230; doi:10.1093/molbev/msi220 [Abstract] [Full Text] [PDF] [Request Permissions]  

Raúl Herranz, Jesús Mateos, José A. Mas, Elena García-Zaragoza, Margarita Cervera, and Roberto Marco

The Coevolution of Insect Muscle TpnT and TpnI Gene Isoforms
MBE Advance Access published on July 27, 2005
Mol Biol Evol 2005 22: 2231-2242; doi:10.1093/molbev/msi223 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Catherine A. Palmer, Richard A. Watts, Ron G. Gregg, Maureen A. McCall, Lynne D. Houck, Richard Highton, and Stevan J. Arnold

Lineage-Specific Differences in Evolutionary Mode in a Salamander Courtship Pheromone
MBE Advance Access published on July 20, 2005
Mol Biol Evol 2005 22: 2243-2256; doi:10.1093/molbev/msi219 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Volker Hollich, Lena Milchert, Lars Arvestad, and Erik L. L. Sonnhammer

Assessment of Protein Distance Measures and Tree-Building Methods for Phylogenetic Tree Reconstruction
MBE Advance Access published on July 27, 2005
Mol Biol Evol 2005 22: 2257-2264; doi:10.1093/molbev/msi224 [Abstract] [Full Text] [PDF] [Request Permissions]  

Karl Vandepoele, Nadine Van Roy, Katrien Staes, Frank Speleman, and Frans van Roy

A Novel Gene Family NBPF: Intricate Structure Generated by Gene Duplications During Primate Evolution
MBE Advance Access published on August 3, 2005
Mol Biol Evol 2005 22: 2265-2274; doi:10.1093/molbev/msi222 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Jaime E. Blair and S. Blair Hedges

Molecular Phylogeny and Divergence Times of Deuterostome Animals
MBE Advance Access published on July 27, 2005
Mol Biol Evol 2005 22: 2275-2284; doi:10.1093/molbev/msi225 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Xiaofei Shi, Hong Gu, Edward Susko, and Chris Field

The Comparison of the Confidence Regions in Phylogeny
MBE Advance Access published on July 27, 2005
Mol Biol Evol 2005 22: 2285-2296; doi:10.1093/molbev/msi226 [Abstract] [Full Text] [PDF] [Request Permissions]  

Patricia Escobar-Páramo, Sulagna Ghosh, and Jocelyne DiRuggiero

Evidence for Genetic Drift in the Diversification of a Geographically Isolated Population of the Hyperthermophilic Archaeon Pyrococcus
MBE Advance Access published on August 3, 2005
Mol Biol Evol 2005 22: 2297-2303; doi:10.1093/molbev/msi227 [Abstract] [Full Text] [PDF] [Supplementary Material]  [Request Permissions]  

Richard M. Clark, Simon Tavaré, and John Doebley

Estimating a Nucleotide Substitution Rate for Maize from Polymorphism at a Major Domestication Locus
MBE Advance Access published on August 3, 2005
Mol Biol Evol 2005 22: 2304-2312; doi:10.1093/molbev/msi228 [Abstract] [Full Text] [PDF] [Request Permissions]  

Errata:

J. Friedlaender, T. Schurr, F. Gentz, G. Koki, F. Friedlaender, G. Horvat, P. Babb, S. Cerchio, F. Kaestle, M. Schenfield, R. Deka, R. Yanagihara, and D.A. Merriwether

Expanding Southwest Pacific mitochondrial haplogroups P and Q
Mol Biol Evol 2005 22: 2313; doi:10.1093/molbev/msj003 [Extract] [Full Text] [PDF] [Request Permissions]  

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