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Volume 29 Issue 6 June 2012

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Letters

    • Andreas Matzke,
    • Gennady Churakov,
    • Petra Berkes,
    • Erin M. Arms,
    • Denise Kelsey,
    • Jürgen Brosius,
    • Jan Ole Kriegs,
    • and Jürgen Schmitz

    Retroposon Insertion Patterns of Neoavian Birds: Strong Evidence for an Extensive Incomplete Lineage Sorting Era

    Mol Biol Evol (2012) 29(6): 1497-1501 first published online January 3, 2012 doi:10.1093/molbev/msr319
    • Tovah Salcedo,
    • Ravi J. Upadhyay,
    • Keizo Nagasaki,
    • and Debashish Bhattacharya

    Dozens of Toxin-Related Genes Are Expressed in a Nontoxic Strain of the Dinoflagellate Heterocapsa circularisquama

    Mol Biol Evol (2012) 29(6): 1503-1506 first published online January 16, 2012 doi:10.1093/molbev/mss007
    • Yang Liu,
    • Huihui Xu,
    • Xinpu Yuan,
    • Stephen J. Rossiter,
    • and Shuyi Zhang

    Multiple Adaptive Losses of Alanine-Glyoxylate Aminotransferase Mitochondrial Targeting in Fruit-Eating Bats

    Mol Biol Evol (2012) 29(6): 1507-1511 first published online January 19, 2012 doi:10.1093/molbev/mss013

Research Articles

    • Fernando L. Mendez,
    • Joseph C. Watkins,
    • and Michael F. Hammer

    Global Genetic Variation at OAS1 Provides Evidence of Archaic Admixture in Melanesian Populations

    Mol Biol Evol (2012) 29(6): 1513-1520 first published online January 16, 2012 doi:10.1093/molbev/msr301
    • R. M. Graze,
    • L. L. Novelo,
    • V. Amin,
    • J. M. Fear,
    • G. Casella,
    • S. V. Nuzhdin,
    • and L. M. McIntyre

    Allelic Imbalance in Drosophila Hybrid Heads: Exons, Isoforms, and Evolution

    Mol Biol Evol (2012) 29(6): 1521-1532 first published online January 7, 2012 doi:10.1093/molbev/msr318
    • Orchid M. Allicock,
    • Philippe Lemey,
    • Andrew J. Tatem,
    • Oliver G. Pybus,
    • Shannon N. Bennett,
    • Brandi A. Mueller,
    • Marc A. Suchard,
    • Jerome E. Foster,
    • Andrew Rambaut,
    • and Christine V. F. Carrington

    Phylogeography and Population Dynamics of Dengue Viruses in the Americas

    Mol Biol Evol (2012) 29(6): 1533-1543 first published online January 6, 2012 doi:10.1093/molbev/msr320
    • Sidney K. Pierce,
    • Xiaodong Fang,
    • Julie A. Schwartz,
    • Xuanting Jiang,
    • Wei Zhao,
    • Nicholas E. Curtis,
    • Kevin M. Kocot,
    • Bicheng Yang,
    • and Jian Wang

    Transcriptomic Evidence for the Expression of Horizontally Transferred Algal Nuclear Genes in the Photosynthetic Sea Slug, Elysia chlorotica

    Mol Biol Evol (2012) 29(6): 1545-1556 first published online December 23, 2011 doi:10.1093/molbev/msr316
    • Sen Zhao,
    • Fabien Burki,
    • Jon Bråte,
    • Patrick J. Keeling,
    • Dag Klaveness,
    • and Kamran Shalchian-Tabrizi

    Collodictyon—An Ancient Lineage in the Tree of Eukaryotes

    Mol Biol Evol (2012) 29(6): 1557-1568 first published online January 6, 2012 doi:10.1093/molbev/mss001
    OPEN ACCESS
    • Shigeki Nakagome,
    • Shuhei Mano,
    • Lukasz Kozlowski,
    • Janusz M. Bujnicki,
    • Hiroki Shibata,
    • Yasuaki Fukumaki,
    • Judith R. Kidd,
    • Kenneth K. Kidd,
    • Shoji Kawamura,
    • and Hiroki Oota

    Crohn's Disease Risk Alleles on the NOD2 Locus Have Been Maintained by Natural Selection on Standing Variation

    Mol Biol Evol (2012) 29(6): 1569-1585 first published online January 12, 2012 doi:10.1093/molbev/mss006
    • Damien M. de Vienne,
    • Sébastien Ollier,
    • and Gabriela Aguileta

    Phylo-MCOA: A Fast and Efficient Method to Detect Outlier Genes and Species in Phylogenomics Using Multiple Co-inertia Analysis

    Mol Biol Evol (2012) 29(6): 1587-1598 first published online January 3, 2012 doi:10.1093/molbev/msr317
    • R. Cagliani,
    • F. R. Guerini,
    • M. Fumagalli,
    • S. Riva,
    • C. Agliardi,
    • D. Galimberti,
    • U. Pozzoli,
    • A. Goris,
    • B. Dubois,
    • C. Fenoglio,
    • D. Forni,
    • S. Sanna,
    • I. Zara,
    • M. Pitzalis,
    • M. Zoledziewska,
    • F. Cucca,
    • F. Marini,
    • G. P. Comi,
    • E. Scarpini,
    • N. Bresolin,
    • M. Clerici,
    • and M. Sironi

    A Trans-Specific Polymorphism in ZC3HAV1 Is Maintained by Long-Standing Balancing Selection and May Confer Susceptibility to Multiple Sclerosis

    Mol Biol Evol (2012) 29(6): 1599-1613 first published online January 6, 2012 doi:10.1093/molbev/mss002
    • David W. Weisrock,
    • Stacey D. Smith,
    • Lauren M. Chan,
    • Karla Biebouw,
    • Peter M. Kappeler,
    • and Anne D. Yoder

    Concatenation and Concordance in the Reconstruction of Mouse Lemur Phylogeny: An Empirical Demonstration of the Effect of Allele Sampling in Phylogenetics

    Mol Biol Evol (2012) 29(6): 1615-1630 first published online January 12, 2012 doi:10.1093/molbev/mss008
    • V. Llaurens,
    • M. McMullan,
    • and C. van Oosterhout

    Cryptic MHC Polymorphism Revealed but Not Explained by Selection on the Class IIB Peptide-Binding Region

    Mol Biol Evol (2012) 29(6): 1631-1644 first published online January 18, 2012 doi:10.1093/molbev/mss012
    • James B. Pease and
    • Matthew W. Hahn

    Sex Chromosomes Evolved from Independent Ancestral Linkage Groups in Winged Insects

    Mol Biol Evol (2012) 29(6): 1645-1653 first published online January 16, 2012 doi:10.1093/molbev/mss010
    • M. Madlen Vetter,
    • Ilkka Kronholm,
    • Fei He,
    • Heidrun Häweker,
    • Matthieu Reymond,
    • Joy Bergelson,
    • Silke Robatzek,
    • and Juliette de Meaux

    Flagellin Perception Varies Quantitatively in Arabidopsis thaliana and Its Relatives

    Mol Biol Evol (2012) 29(6): 1655-1667 first published online January 16, 2012 doi:10.1093/molbev/mss011
    • Yasuhiro Takenaka,
    • Atsushi Yamaguchi,
    • Naoki Tsuruoka,
    • Masaki Torimura,
    • Takashi Gojobori,
    • and Yasushi Shigeri

    Evolution of Bioluminescence in Marine Planktonic Copepods

    Mol Biol Evol (2012) 29(6): 1669-1681 first published online January 12, 2012 doi:10.1093/molbev/mss009
    • Jacques-Philippe Colletier,
    • Alexey Aleksandrov,
    • Nicolas Coquelle,
    • Sonia Mraihi,
    • Elena Mendoza-Barberá,
    • Martin Field,
    • and Dominique Madern

    Sampling the Conformational Energy Landscape of a Hyperthermophilic Protein by Engineering Key Substitutions

    Mol Biol Evol (2012) 29(6): 1683-1694 first published online January 19, 2012 doi:10.1093/molbev/mss015
    • Robert Lanfear,
    • Brett Calcott,
    • Simon Y. W. Ho,
    • and Stephane Guindon

    PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

    Mol Biol Evol (2012) 29(6): 1695-1701 first published online January 20, 2012 doi:10.1093/molbev/mss020

Erratum

    • Cameron J. Weadickand and
    • Belinda S.W. Chang

    An Improved Likelihood Ratio Test for Detecting Site-Specific Functional Divergence among Clades of Protein-Coding Genes

    Mol Biol Evol (2012) 29(6): 1702 doi:10.1093/molbev/mss127

Standing Material

  • Associate Editors

    Mol Biol Evol (2012) 29(6): NP doi:10.1093/molbev/mss044

  • SMBE Editors and Council

    Mol Biol Evol (2012) 29(6): NP doi:10.1093/molbev/mss045

  • Subscription Page

    Mol Biol Evol (2012) 29(6): NP doi:10.1093/molbev/mss046

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

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This Issue

June 2012 29 (6)
Molecular Biology and Evolution
  1. Letters
  2. Research Articles
  3. Erratum
  4. Standing Material

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