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MBE Advance Access published online on June 17, 2009

Molecular Biology and Evolution, doi:10.1093/molbev/msp120
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© The Author 2009. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oxfordjournals.org

Research Article

On the origins and admixture of Malagasy: new evidence from high resolution analyses of paternal and maternal lineages

Sergio Tofanelli*,(1), Stefania Bertoncini*,(1), Loredana Castrì(2), Donata Luiselli(2), Francesc Calafell(3), Giuseppe Donati(4) and Giorgio Paoli(1)

Institution at which research was mainly done: Dipartimento di Biologia, Unità di Antropologia, Università di Pisa, Pisa, Italy
(1) Dipartimento di Biologia, Unità di Antropologia, Università di Pisa, Pisa, Italy
(2) Dipartimento di Biologia Evoluzionistica Sperimentale, Università di Bologna, Bologna, Italy
(3) Department de Ciències Experimentals i de la Salut (CEXS), Unitat de Biologia Evolutiva, Universitat Pompeu Fabra, Barcelona, Spain
(4) Department of Anthropology & Geography, Oxford Brookes University, Oxford, UK

Corresponding author: Sergio Tofanelli, Ph.D., Dipartimento di Biologia, Unità di Antropologia, Università di Pisa, Via Derna 1, Pisa, Italy, Phone : +39 050 2211346, Fax : +39 050 2211475, email : stofanelli{at}biologia.unipi.it

Received for publication May 19, 2009. Revision received June 8, 2009. Accepted for publication June 11, 2009.

The Malagasy have been shown to be a genetically admixed population combining parental lineages with African and South East Asian ancestry. In the present paper we fit the Malagasy admixture history in a highly resolved phylogeographic framework by typing a large set of mtDNA and Y DNA markers in unrelated individuals from inland (Merina) and coastal (Antandroy, Antanosy, Antaisaka) ethnic groups. This allowed performance of a multi-level analysis in which the diversity among main ethnic divisions, lineage ancestries, and modes of inheritance could be concurrently evaluated. Admixture was confirmed to result from the encounter of African and South-East Asian people with minor recent male contributions from Europe. However, new scenarios are depicted about Malagasy admixture history. The distribution of ancestral components was ethnic- and sex-biased, with the Asian ancestry appearing more conserved in the female than in the male gene pool, and in inland than in coastal groups. A statistic based on haplotype sharing (DHS), showing low sampling error and time linearity over the last 200 generations, was here introduced for the first time and helped to integrate our results with linguistic and archeological data. The focus about the origin of Malagasy lineages was enlarged in space and pushed back in time. Homelands could not be pinpointed, but appeared to comprise two vast areas containing different populations from sub-Saharan Africa and South-East Asia. The pattern of diffusion of uni-parental lineages was compatible with at least two events: a primary admixture of proto-Malay people with Bantu-speakers bearing a western-like pool of haplotypes, followed by a secondary flow of Southeastern Bantu-speakers unpaired for gender (mainly male-driven) and geography (mainly coastal).

Key Words: Malagasy • mtDNA • Y chromosome • Admixture


* Joint authorship: Sergio Tofanelli and Stefania Bertoncini contributed equally to the paper


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