Skip Navigation



MBE Advance Access published online on October 17, 2006

Molecular Biology and Evolution, doi:10.1093/molbev/msl150
This Article
Right arrow Advance Access manuscript (PDF) Freely available
Right arrow All Versions of this Article:
24/1/26    most recent
msl150v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Benton, M. J.
Right arrow Articles by Donoghue, P. C. J.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Benton, M. J.
Right arrow Articles by Donoghue, P. C. J.
Social Bookmarking
 Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author 2006. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oxfordjournals.org
Accepted October 10, 2006

Review

Paleontological Evidence to Date the Tree of Life

Michael J. Benton 1 * and Philip C. J. Donoghue 1

1 Department of Earth Sciences, Wills Memorial Building, Queen's Road, Bristol BS8 1RJ, UK

* To whom correspondence should be addressed.
Michael J. Benton, E-mail: mike.benton{at}bris.ac.uk


   Abstract

The role of fossils in dating the tree of life has been misunderstood. Fossils can provide good minimum age estimates for branches in the tree, but maximum constraints on those ages are poorer. Current debates about which are the ‘best’ fossil dates for calibration move to consideration of the most appropriate constraints on the ages of tree nodes. Because fossil-based dates are constraints, and because molecular evolution is not perfectly clock-like, analysts should use more rather than fewer dates, but there has to be a balance between many genes and few dates vs. many dates and few genes. We provide ‘hard’ minimum and ‘soft’ maximum age constraints for 30 divergences among key genome model organisms; these should contribute to better understanding of the dating of the animal tree of life.

Keywords: tree of life; paleontological dating; calibration; quality of fossil record.
Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
J HeredHome page
Genome 10K Community of Scientists
Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species
J. Hered., November 6, 2009; (2009) esp086v2.
[Abstract] [Full Text] [PDF]


Home page
Mol Biol EvolHome page
J. Nehyba, R. Hrdlickova, and H. R. Bose
Dynamic Evolution of Immune System Regulators: The History of the Interferon Regulatory Factor Family
Mol. Biol. Evol., November 1, 2009; 26(11): 2539 - 2550.
[Abstract] [Full Text] [PDF]


Home page
JEMHome page
T. Graef, A. K. Moesta, P. J. Norman, L. Abi-Rached, L. Vago, A. M. Older Aguilar, M. Gleimer, J. A. Hammond, L. A. Guethlein, D. A. Bushnell, et al.
KIR2DS4 is a product of gene conversion with KIR3DL2 that introduced specificity for HLA-A*11 while diminishing avidity for HLA-C
J. Exp. Med., October 26, 2009; 206(11): 2557 - 2572.
[Abstract] [Full Text] [PDF]


Home page
ANN BOT (LOND)Home page
F. Forest
Calibrating the Tree of Life: fossils, molecules and evolutionary timescales
Ann. Bot., October 1, 2009; 104(5): 789 - 794.
[Abstract] [Full Text] [PDF]


Home page
J. Virol.Home page
J. Zielonka, I. G. Bravo, D. Marino, E. Conrad, M. Perkovic, M. Battenberg, K. Cichutek, and C. Munk
Restriction of Equine Infectious Anemia Virus by Equine APOBEC3 Cytidine Deaminases
J. Virol., August 1, 2009; 83(15): 7547 - 7559.
[Abstract] [Full Text] [PDF]


Home page
Syst BiolHome page
S. Y. W. Ho and M. J. Phillips
Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times
Syst Biol, July 3, 2009; (2009) syp035v1.
[Full Text] [PDF]


Home page
Gen Biol EvolHome page
M. Rho, M. Zhou, X. Gao, S. Kim, H. Tang, and M. Lynch
Independent Mammalian Genome Contractions Following the KT Boundary
Gen Biol Evol, June 22, 2009; 2009(0): 2 - 12.
[Abstract] [Full Text] [PDF]


Home page
Mol Biol EvolHome page
R. Farcas, E. Schneider, K. Frauenknecht, I. Kondova, R. Bontrop, J. Bohl, B. Navarro, M. Metzler, H. Zischler, U. Zechner, et al.
Differences in DNA Methylation Patterns and Expression of the CCRK Gene in Human and Nonhuman Primate Cortices
Mol. Biol. Evol., June 1, 2009; 26(6): 1379 - 1389.
[Abstract] [Full Text] [PDF]


Home page
Genome ResHome page
P. J. Norman, L. Abi-Rached, K. Gendzekhadze, J. A. Hammond, A. K. Moesta, D. Sharma, T. Graef, K. L. McQueen, L. A. Guethlein, C. V.F. Carrington, et al.
Meiotic recombination generates rich diversity in NK cell receptor genes, alleles, and haplotypes
Genome Res., May 1, 2009; 19(5): 757 - 769.
[Abstract] [Full Text] [PDF]


Home page
Mol Biol EvolHome page
Y. Yamanoue, M. Miya, K. Matsuura, S. Miyazawa, N. Tsukamoto, H. Doi, H. Takahashi, K. Mabuchi, M. Nishida, and H. Sakai
Explosive Speciation of Takifugu: Another Use of Fugu as a Model System for Evolutionary Biology
Mol. Biol. Evol., March 1, 2009; 26(3): 623 - 629.
[Abstract] [Full Text] [PDF]


Home page
Mol Biol EvolHome page
B. M. Hallstrom and A. Janke
Gnathostome Phylogenomics Utilizing Lungfish EST Sequences
Mol. Biol. Evol., February 1, 2009; 26(2): 463 - 471.
[Abstract] [Full Text] [PDF]


Home page
Bulletin de la Societe Geologique de FranceHome page
G. Nelson and P. Y. Ladiges
Biogeography and the molecular dating game: a futile revival of phenetics?
Bulletin de la Societe Geologique de France, January 1, 2009; 180(1): 39 - 43.
[Abstract] [Full Text] [PDF]


Home page
Physiol. GenomicsHome page
A. M. Ebert, C. A. McAnelly, A. V. Handschy, R. L. Mueller, W. A. Horne, and D. M. Garrity
Genomic organization, expression, and phylogenetic analysis of Ca2+ channel {beta}4 genes in 13 vertebrate species
Physiol Genomics, October 8, 2008; 35(2): 133 - 144.
[Abstract] [Full Text] [PDF]


Home page
Integr. Comp. Biol.Home page
C. L. Organ, R. G. Moreno, and S. V. Edwards
Three tiers of genome evolution in reptiles
Integr. Comp. Biol., October 1, 2008; 48(4): 494 - 504.
[Abstract] [Full Text] [PDF]


Home page
Physiol. GenomicsHome page
H. Evans, T. De Tomaso, M. Quail, J. Rogers, A. Y. Gracey, A. R. Cossins, and M. Berenbrink
Ancient and modern duplication events and the evolution of stearoyl-CoA desaturases in teleost fishes
Physiol Genomics, September 17, 2008; 35(1): 18 - 29.
[Abstract] [Full Text] [PDF]


Home page
Mol Biol EvolHome page
S. Pantalacci, A. Chaumot, G. Benoit, A. Sadier, F. Delsuc, E. J. P. Douzery, and V. Laudet
Conserved Features and Evolutionary Shifts of the EDA Signaling Pathway Involved in Vertebrate Skin Appendage Development
Mol. Biol. Evol., May 1, 2008; 25(5): 912 - 928.
[Abstract] [Full Text] [PDF]


Home page
Phil Trans R Soc BHome page
G. E Budd
The earliest fossil record of the animals and its significance
Phil Trans R Soc B, April 27, 2008; 363(1496): 1425 - 1434.
[Abstract] [Full Text] [PDF]


Home page
Phil Trans R Soc BHome page
K. J Peterson, J. A Cotton, J. G Gehling, and D. Pisani
The Ediacaran emergence of bilaterians: congruence between the genetic and the geological fossil records
Phil Trans R Soc B, April 27, 2008; 363(1496): 1435 - 1443.
[Abstract] [Full Text] [PDF]


Home page
Mol Biol EvolHome page
Y.-H. Loh, S. Brenner, and B. Venkatesh
Investigation of Loss and Gain of Introns in the Compact Genomes of Pufferfishes (Fugu and Tetraodon)
Mol. Biol. Evol., March 1, 2008; 25(3): 526 - 535.
[Abstract] [Full Text] [PDF]


Home page
Proc. Natl. Acad. Sci. USAHome page
A. M. Heimberg, L. F. Sempere, V. N. Moy, P. C. J. Donoghue, and K. J. Peterson
MicroRNAs and the advent of vertebrate morphological complexity
PNAS, February 26, 2008; 105(8): 2946 - 2950.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
M. Xie, A. Mosig, X. Qi, Y. Li, P. F. Stadler, and J. J.-L. Chen
Structure and Function of the Smallest Vertebrate Telomerase RNA from Teleost Fish
J. Biol. Chem., January 25, 2008; 283(4): 2049 - 2059.
[Abstract] [Full Text] [PDF]


Home page
Mol Biol EvolHome page
B. Nabholz, S. Glemin, and N. Galtier
Strong Variations of Mitochondrial Mutation Rate across Mammals--the Longevity Hypothesis
Mol. Biol. Evol., January 1, 2008; 25(1): 120 - 130.
[Abstract] [Full Text] [PDF]


Home page
Journal of the Geological SocietyHome page
H. J. Falcon-Lang, M. J. Benton, and M. Stimson
Ecology of earliest reptiles inferred from basal Pennsylvanian trackways
Journal of the Geological Society, December 1, 2007; 164(6): 1113 - 1118.
[Abstract] [Full Text] [PDF]


Home page
Mol Biol EvolHome page
B. M. Hallstrom, M. Kullberg, M. A. Nilsson, and A. Janke
Phylogenomic Data Analyses Provide Evidence that Xenarthra and Afrotheria Are Sister Groups
Mol. Biol. Evol., September 1, 2007; 24(9): 2059 - 2068.
[Abstract] [Full Text] [PDF]


Home page
Syst BiolHome page
A. F. Hugall, R. Foster, and M. S. Y. Lee
Calibration Choice, Rate Smoothing, and the Pattern of Tetrapod Diversification According to the Long Nuclear Gene RAG-1
Syst Biol, August 1, 2007; 56(4): 543 - 563.
[Abstract] [Full Text] [PDF]


Home page
Mol Biol EvolHome page
L. A. Hug and A. J. Roger
The Impact of Fossils and Taxon Sampling on Ancient Molecular Dating Analyses
Mol. Biol. Evol., August 1, 2007; 24(8): 1889 - 1897.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
Y. Lu, X. He, and S. Zhong
Cross-species microarray analysis with the OSCAR system suggests an INSR->Pax6->NQO1 neuro-protective pathway in aging and Alzheimer's disease
Nucleic Acids Res., July 13, 2007; 35(suppl_2): W105 - W114.
[Abstract] [Full Text] [PDF]


Home page
Biol LettHome page
K. L Sanders and M. S.Y Lee
Evaluating molecular clock calibrations using Bayesian analyses with soft and hard bounds
Biol Lett, June 22, 2007; 3(3): 275 - 279.
[Abstract] [Full Text] [PDF]


Home page
Syst BiolHome page
B. Rannala and Z. Yang
Inferring Speciation Times under an Episodic Molecular Clock
Syst Biol, June 1, 2007; 56(3): 453 - 466.
[Abstract] [Full Text] [PDF]


Home page
Mol Biol EvolHome page
S. Cho and J. Zhang
Zebrafish Ribonucleases Are Bactericidal: Implications for the Origin of the Vertebrate RNase A Superfamily
Mol. Biol. Evol., May 1, 2007; 24(5): 1259 - 1268.
[Abstract] [Full Text] [PDF]


Home page
Mol Biol EvolHome page
M. J. Genner, O. Seehausen, D. H. Lunt, D. A. Joyce, P. W. Shaw, G. R. Carvalho, and G. F. Turner
Age of Cichlids: New Dates for Ancient Lake Fish Radiations
Mol. Biol. Evol., May 1, 2007; 24(5): 1269 - 1282.
[Abstract] [Full Text] [PDF]


Home page
Mol Biol EvolHome page
M. Semon and K. H. Wolfe
Rearrangement Rate following the Whole-Genome Duplication in Teleosts
Mol. Biol. Evol., March 1, 2007; 24(3): 860 - 867.
[Abstract] [Full Text] [PDF]



Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.