MBE Advance Access published online on June 27, 2003
Molecular Biology and Evolution, doi:10.1093/molbev/msg159
Molecular Biology and Evolution © Society for Molecular Biology and Evolution 2003; all rights reserved
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1 Institut für Spezielle Botanik, Universität Jena, Philosophenweg 16, D-07743 Jena, Germany
* To whom correspondence should be addressed. E-mail: Vadim.Goremykin{at}uni-jena.de.
Phylogenetic analyses based on comparison of a limited number of genes recently suggested that Amborella trichopoda is the most ancient angiosperm. Here we present the complete sequence of the chloroplast genome of this plant. It does not display any of the genes characteristical of chloroplast DNA of the gymnosperm Pinus thunbergii (chlB, chlL, chlN, psaM and ycf12). The majority of phylogenetic analyses of protein-coding genes of this chloroplast DNA suggests that Amborella is not the basal angiosperm and not even the most basal among dicots. Key Words:
Amborella, chloroplast genomes, angiosperms, gymnosperms, molecular evolution, substitution rates
© 2003 Society for Molecular Biology and Evolution
Original Articles
Analysis of the Amborella trichopoda Chloroplast Genome Sequence Suggests That Amborella Is not a Basal Angiosperm
2 Zentrum Pharmakologie und Toxikologie, Universität Göttingen, Robert-Koch-Str. 40, D-37075 Göttingen, Germany
3 Klinik für Innere Medizin, Universität Jena, Erlanger Allee 101, D-07740 Jena, Germany
![]()
Abstract ![]()
CiteULike
Connotea
Del.icio.us What's this?
This article has been cited by other articles:
![]() |
J. Wu and E. Susko General Heterotachy and Distance Method Adjustments Mol. Biol. Evol., December 1, 2009; 26(12): 2689 - 2697. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. K. Endress and J. A. Doyle Reconstructing the ancestral angiosperm flower and its initial specializations Am. J. Botany, January 1, 2009; 96(1): 22 - 66. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. W. Graham and W. J. D. Iles Different gymnosperm outgroups have (mostly) congruent signal regarding the root of flowering plant phylogeny Am. J. Botany, January 1, 2009; 96(1): 216 - 227. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. K. Jansen, Z. Cai, L. A. Raubeson, H. Daniell, C. W. dePamphilis, J. Leebens-Mack, K. F. Muller, M. Guisinger-Bellian, R. C. Haberle, A. K. Hansen, et al. Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns PNAS, December 4, 2007; 104(49): 19369 - 19374. [Abstract] [Full Text] [PDF] |
||||
![]() |
G. Theissen and R. Melzer Molecular Mechanisms Underlying Origin and Diversification of the Angiosperm Flower Ann. Bot., September 1, 2007; 100(3): 603 - 619. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. Susko and A. J. Roger On Reduced Amino Acid Alphabets for Phylogenetic Inference Mol. Biol. Evol., September 1, 2007; 24(9): 2139 - 2150. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Geuten, T. Massingham, P. Darius, E. Smets, and N. Goldman Experimental Design Criteria in Phylogenetics: Where to Add Taxa Syst Biol, August 1, 2007; 56(4): 609 - 622. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. O. Richardson and J. D. Palmer Horizontal gene transfer in plants J. Exp. Bot., January 1, 2007; 58(1): 1 - 9. [Abstract] [Full Text] [PDF] |
||||
![]() |
H.-C. Wang, M. Spencer, E. Susko, and A. J. Roger Testing for Covarion-like Evolution in Protein Sequences Mol. Biol. Evol., January 1, 2007; 24(1): 294 - 305. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. M. Bateman, J. Hilton, and P. J. Rudall Morphological and molecular phylogenetic context of the angiosperms: contrasting the 'top-down' and 'bottom-up' approaches used to infer the likely characteristics of the first flowers J. Exp. Bot., October 1, 2006; 57(13): 3471 - 3503. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. M. McMahon and M. J. Sanderson Phylogenetic Supermatrix Analysis of GenBank Sequences from 2228 Papilionoid Legumes Syst Biol, October 1, 2006; 55(5): 818 - 836. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. R. Holland, L. S. Jermiin, and V. Moulton Improved Consensus Network Techniques for Genome-Scale Phylogeny Mol. Biol. Evol., May 1, 2006; 23(5): 848 - 855. [Abstract] [Full Text] [PDF] |
||||
![]() |
C.-C. Chang, H.-C. Lin, I-P. Lin, T.-Y. Chow, H.-H. Chen, W.-H. Chen, C.-H. Cheng, C.-Y. Lin, S.-M. Liu, C.-C. Chang, et al. The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic Implications Mol. Biol. Evol., February 1, 2006; 23(2): 279 - 291. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. H. Wortley, P. J. Rudall, D. J. Harris, and R. W. Scotland How Much Data are Needed to Resolve a Difficult Phylogeny? Case Study in Lamiales Syst Biol, October 1, 2005; 54(5): 697 - 709. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Leebens-Mack, L. A. Raubeson, L. Cui, J. V. Kuehl, M. H. Fourcade, T. W. Chumley, J. L. Boore, R. K. Jansen, and C. W. dePamphilis Identifying the Basal Angiosperm Node in Chloroplast Genome Phylogenies: Sampling One's Way Out of the Felsenstein Zone Mol. Biol. Evol., October 1, 2005; 22(10): 1948 - 1963. [Abstract] [Full Text] [PDF] |
||||
![]() |
V. V. Goremykin, B. Holland, K. I. Hirsch-Ernst, and F. H. Hellwig Analysis of Acorus calamus Chloroplast Genome and Its Phylogenetic Implications Mol. Biol. Evol., September 1, 2005; 22(9): 1813 - 1822. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Ane, J. G. Burleigh, M. M. McMahon, and M. J. Sanderson Covarion Structure in Plastid Genome Evolution: A New Statistical Test Mol. Biol. Evol., April 1, 2005; 22(4): 914 - 924. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. A. Koch, C. Dobes, M. Matschinger, W. Bleeker, J. Vogel, M. Kiefer, and T. Mitchell-Olds Evolution of the trnF(GAA) Gene in Arabidopsis Relatives and the Brassicaceae Family: Monophyletic Origin and Subsequent Diversification of a Plastidic Pseudogene Mol. Biol. Evol., April 1, 2005; 22(4): 1032 - 1043. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Fourquin, M. Vinauger-Douard, B. Fogliani, C. Dumas, and C. P. Scutt Evidence that CRABS CLAW and TOUSLED have conserved their roles in carpel development since the ancestor of the extant angiosperms PNAS, March 22, 2005; 102(12): 4649 - 4654. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Lohne and T. Borsch Molecular Evolution and Phylogenetic Utility of the petD Group II Intron: A Case Study in Basal Angiosperms Mol. Biol. Evol., February 1, 2005; 22(2): 317 - 332. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. A. Steane Complete Nucleotide Sequence of the Chloroplast Genome from the Tasmanian Blue Gum, Eucalyptus globulus (Myrtaceae) DNA Res, January 1, 2005; 12(3): 215 - 220. [Abstract] [Full Text] [PDF] |
||||
![]() |
U. Bergthorsson, A. O. Richardson, G. J. Young, L. R. Goertzen, and J. D. Palmer From the Cover: Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella PNAS, December 21, 2004; 101(51): 17747 - 17752. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. S. Soltis and D. E. Soltis The origin and diversification of angiosperms Am. J. Botany, October 1, 2004; 91(10): 1614 - 1626. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. E. Soltis and P. S. Soltis Amborella not a "basal angiosperm"? Not so fast Am. J. Botany, June 1, 2004; 91(6): 997 - 1001. [Abstract] [Full Text] [PDF] |
||||
![]() |
W. E. Friedman and J. H. Williams Developmental Evolution of the Sexual Process in Ancient Flowering Plant Lineages PLANT CELL, June 1, 2004; 16(suppl_1): S119 - S132. [Full Text] [PDF] |
||||







