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MBE Advance Access originally published online on December 3, 2008
Molecular Biology and Evolution 2009 26(3):487-490; doi:10.1093/molbev/msn278
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© The Author 2008. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oxfordjournals.org

Letters

Large Number of Ultraconserved Elements Were Already Present in the Jawed Vertebrate Ancestor

Jianli Wang1, Alison P. Lee1, Rimantas Kodzius, Sydney Brenner and Byrappa Venkatesh

Institute of Molecular and Cell Biology, A*STAR, Biopolis, Singapore

E-mail: mcbbv{at}imcb.a-star.edu.sg.

Accepted for publication November 23, 2008.

Stephen (2008) identified 13,736 ultraconserved elements (UCEs) in placental mammals and investigated their evolution in opossum, chicken, frog, and fugu. They found that there was a massive expansion of UCEs during tetrapod evolution and the substitution rate in UCEs showed a significant decline in tetrapods compared with fugu, suggesting they were exapted in tetrapods. They considered it unlikely that these elements are ancient but evolved at a higher rate in teleost fishes. In this study, we investigated the evolution of UCEs in a cartilaginous fish, the elephant shark and show that nearly half the UCEs were present in the jawed vertebrate ancestor. The substitution rate in UCEs is higher in fugu than in elephant shark, and approximately one-third of ancient UCEs have diverged beyond recognition in teleost fishes. These data indicate that UCEs have evolved at a higher rate in teleost fishes, which may have implications for their vast diversity and evolutionary success.

Key Words: ultraconserved elements • elephant shark • teleost fish


1 These authors contributed equally to this work.

Naruya Saitou, Associate Editor


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