Molecular Biology and Evolution 19:2226-2238 (2002)
© 2002 Society for Molecular Biology and Evolution
Prokaryotic Evolution in Light of Gene Transfer
*Department of Molecular and Cell Biology, University of Connecticut;
Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Canada;
Department of Biological Sciences, University of Pittsburgh
Accumulating prokaryotic gene and genome sequences reveal that the exchange of genetic information through both homology-dependent recombination and horizontal (lateral) gene transfer (HGT) is far more important, in quantity and quality, than hitherto imagined. The traditional view, that prokaryotic evolution can be understood primarily in terms of clonal divergence and periodic selection, must be augmented to embrace gene exchange as a creative force, itself responsible for much of the pattern of similarities and differences we see between prokaryotic microbes. Rather than replacing periodic selection on genetic diversity, gene loss, and other chromosomal alterations as important players in adaptive evolution, gene exchange acts in concert with these processes to provide a rich explanatory paradigm—some of whose implications we explore here. In particular, we discuss (1) the role of recombination and HGT in giving phenotypic "coherence" to prokaryotic taxa at all levels of inclusiveness, (2) the implications of these processes for the reconstruction and meaning of "phylogeny," and (3) new views of prokaryotic adaptation and diversification based on gene acquisition and exchange.
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|
|
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|
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|
|
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|
|
|
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|
|
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|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
 O. Zhaxybayeva, J. P. Gogarten, R. L. Charlebois, W. F. Doolittle, and R. T. Papke Phylogenetic analyses of cyanobacterial genomes: Quantification of horizontal gene transfer events Genome Res., September 1, 2006; 16(9): 1099 - 1108. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
 J. O. Andersson Microbial Phylogeny and Evolution: Concepts and Controversies Syst Biol, April 1, 2006; 55(2): 359 - 361. [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
 |
|
 A. Sivakumar, C. Wilton, and L. Holm From sequences to a functional unit Physiol Genomics, March 13, 2006; 25(1): 1 - 8. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
 |
|
 A. S. Novozhilov, G. P. Karev, and E. V. Koonin Biological applications of the theory of birth-and-death processes Brief Bioinform, March 1, 2006; 7(1): 70 - 85. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
V. Dvornyk Subfamilies of cpmA, a gene involved in circadian output, have different evolutionary histories in cyanobacteria Microbiology, January 1, 2006; 152(1): 75 - 84. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. M. Fraser-Liggett Insights on biology and evolution from microbial genome sequencing Genome Res., December 1, 2005; 15(12): 1603 - 1610. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
|
|
J. Huang, Y. Xu, and J. P. Gogarten The Presence of a Haloarchaeal Type Tyrosyl-tRNA Synthetase Marks the Opisthokonts as Monophyletic Mol. Biol. Evol., November 1, 2005; 22(11): 2142 - 2146. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. S. Novozhilov, G. P. Karev, and E. V. Koonin Mathematical Modeling of Evolution of Horizontally Transferred Genes Mol. Biol. Evol., August 1, 2005; 22(8): 1721 - 1732. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. E. Bessen, A. Manoharan, F. Luo, J. E. Wertz, and D. A. Robinson Evolution of Transcription Regulatory Genes Is Linked to Niche Specialization in the Bacterial Pathogen Streptococcus pyogenes J. Bacteriol., June 15, 2005; 187(12): 4163 - 4172. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Karlin, J. Mrazek, J. Ma, and L. Brocchieri Predicted highly expressed genes in archaeal genomes PNAS, May 17, 2005; 102(20): 7303 - 7308. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Vetsigian and N. Goldenfeld From The Cover: Global divergence of microbial genome sequences mediated by propagating fronts PNAS, May 17, 2005; 102(20): 7332 - 7337. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Ochman, E. Lerat, and V. Daubin Examining bacterial species under the specter of gene transfer and exchange PNAS, May 3, 2005; 102(suppl_1): 6595 - 6599. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. B. Simonson, J. A. Servin, R. G. Skophammer, C. W. Herbold, M. C. Rivera, and J. A. Lake Decoding the genomic tree of life PNAS, May 3, 2005; 102(suppl_1): 6608 - 6613. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. J. Deeds, H. Hennessey, and E. I. Shakhnovich Prokaryotic phylogenies inferred from protein structural domains Genome Res., March 1, 2005; 15(3): 393 - 402. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
U. Gophna, W. F. Doolittle, and R. L. Charlebois Weighted Genome Trees: Refinements and Applications J. Bacteriol., February 15, 2005; 187(4): 1305 - 1316. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Yang, R. F. Doolittle, and P. E. Bourne Phylogeny determined by protein domain content PNAS, January 11, 2005; 102(2): 373 - 378. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
|
|
E. Sano, S. Carlson, L. Wegley, and F. Rohwer Movement of Viruses between Biomes Appl. Envir. Microbiol., October 1, 2004; 70(10): 5842 - 5846. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
|
|
A. Bolotin, B. Quinquis, A. Sorokin, and D. S. Ehrlich Recent Genetic Transfer between Lactococcus lactis and Enterobacteria J. Bacteriol., October 1, 2004; 186(19): 6671 - 6677. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. D. Palmer, D. E. Soltis, and M. W. Chase The plant tree of life: an overview and some points of view Am. J. Botany, October 1, 2004; 91(10): 1437 - 1445. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
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|
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|
|
|
|
|
|
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|
|
|
|
|
|
L. Chistoserdova, C. Jenkins, M. G. Kalyuzhnaya, C. J. Marx, A. Lapidus, J. A. Vorholt, J. T. Staley, and M. E. Lidstrom The Enigmatic Planctomycetes May Hold a Key to the Origins of Methanogenesis and Methylotrophy Mol. Biol. Evol., July 1, 2004; 21(7): 1234 - 1241. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W. Hao and G. B. Golding Patterns of Bacterial Gene Movement Mol. Biol. Evol., July 1, 2004; 21(7): 1294 - 1307. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
|
|
C. Bera-Maillet, Y. Ribot, and E. Forano Fiber-Degrading Systems of Different Strains of the Genus Fibrobacter Appl. Envir. Microbiol., April 1, 2004; 70(4): 2172 - 2179. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
 |
|
 J. K. McCarthy, A. Uzelac, D. F. Davis, and D. E. Eveleigh Improved Catalytic Efficiency and Active Site Modification of 1,4-{beta}-D-Glucan Glucohydrolase A from Thermotoga neapolitana by Directed Evolution J. Biol. Chem., March 19, 2004; 279(12): 11495 - 11502. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. M. Coombs and T. Barkay Molecular Evidence for the Evolution of Metal Homeostasis Genes by Lateral Gene Transfer in Bacteria from the Deep Terrestrial Subsurface Appl. Envir. Microbiol., March 1, 2004; 70(3): 1698 - 1707. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Leplae, A. Hebrant, S. J. Wodak, and A. Toussaint ACLAME: A CLAssification of Mobile genetic Elements Nucleic Acids Res., January 1, 2004; 32(90001): D45 - 49. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Zhang and C.-T. Zhang Identification of genomic islands in the genome of Bacillus cereus by comparative analysis with Bacillus anthracis Physiol Genomics, December 16, 2003; 16(1): 19 - 23. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. S. Gupta, M. Pereira, C. Chandrasekera, and V. Johari Molecular signatures in protein sequences that are characteristic of cyanobacteria and plastid homologues Int J Syst Evol Microbiol, November 1, 2003; 53(6): 1833 - 1842. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Molbak, A. Tett, D. W. Ussery, K. Wall, S. Turner, M. Bailey, and D. Field The Plasmid Genome Database Microbiology, November 1, 2003; 149(11): 3043 - 3045. [Full Text] [PDF]
|
|
|
|
|
|
G. Xie, N. O. Keyhani, C. A. Bonner, and R. A. Jensen Ancient Origin of the Tryptophan Operon and the Dynamics of Evolutionary Change Microbiol. Mol. Biol. Rev., September 1, 2003; 67(3): 303 - 342. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
|
|
C. G. Kurland, B. Canback, and O. G. Berg Horizontal gene transfer: A critical view PNAS, August 19, 2003; 100(17): 9658 - 9662. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
M. G. Klotz and P. C. Loewen The Molecular Evolution of Catalatic Hydroperoxidases: Evidence for Multiple Lateral Transfer of Genes Between Prokaryota and from Bacteria into Eukaryota Mol. Biol. Evol., July 1, 2003; 20(7): 1098 - 1112. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Raymond and R. E. Blankenship Horizontal gene transfer in eukaryotic algal evolution PNAS, June 24, 2003; 100(13): 7419 - 7420. [Full Text] [PDF]
|
|
|
|
|
|
I.B. ROGOZIN, V.N. BABENKO, N.D. FEDOROVA, J. D. JACKSON, A.R. JACOBS, D.M. KRYLOV, K.S. MAKAROVA, R. MAZUMDER, S.L. MEKHEDOV, B.G. MIRKIN, et al. Evolution of Eukaryotic Gene Repertoire and Gene Structure: Discovering the Unexpected Dynamics of Genome Evolution Cold Spring Harb Symp Quant Biol, January 1, 2003; 68(0): 293 - 302. [Abstract] [PDF]
|
|