Molecular Biology and Evolution 17:1483-1498 (2000)
© 2000 Society for Molecular Biology and Evolution
ARTICLE |
Comparative Evolutionary Analysis of Chalcone Synthase and Alcohol Dehydrogenase Loci in Arabidopsis, Arabis, and Related Genera (Brassicaceae)
Department of Genetics and Evolution, Max Planck Institute of Chemical Ecology, Jena, Germany
We analyzed sequence variation for chalcone synthase (Chs) and alcohol dehydrogenase (Adh) loci in 28 species in the genera Arabidopsis and Arabis and related taxa from tribe Arabideae. Chs was single-copy in nearly all taxa examined, while Adh duplications were found in several species. Phylogenies constructed from both loci confirmed that the closest relatives of Arabidopsis thaliana include Arabidopsis lyrata, Arabidopsis petraea, and Arabidopsis halleri (formerly in the genus Cardaminopsis). Slightly more distant are the North American n = 7 Arabis (Boechera) species. The genus Arabis is polyphyletic—some unrelated species appear within this taxonomic classification, which has little phylogenetic meaning. Fossil pollen data were used to compute a synonymous substitution rate of 1.5 x 10 substitutions per site per year for both Chs and Adh. Arabidopsis thaliana diverged from its nearest relatives about 5 MYA, and from Brassica roughly 24 MYA. Independent molecular and fossil data from several sources all provide similar estimates of evolutionary timescale in the Brassicaceae.
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G. Blanc and K. H. Wolfe Widespread Paleopolyploidy in Model Plant Species Inferred from Age Distributions of Duplicate Genes PLANT CELL, July 1, 2004; 16(7): 1667 - 1678. [Abstract] [Full Text] [PDF]
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K. Boivin, A. Acarkan, R.-S. Mbulu, O. Clarenz, and R. Schmidt The Arabidopsis Genome Sequence as a Tool for Genome Analysis in Brassicaceae. A Comparison of the Arabidopsis and Capsella rubella Genomes Plant Physiology, June 1, 2004; 135(2): 735 - 744. [Abstract] [Full Text] [PDF]
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H.-S. Yoon and D. A. Baum Transgenic study of parallelism in plant morphological evolution PNAS, April 27, 2004; 101(17): 6524 - 6529. [Abstract] [Full Text] [PDF]
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M. Schein, Z. Yang, T. Mitchell-Olds, and K. J. Schmid Rapid Evolution of a Pollen-Specific Oleosin-Like Gene Family from Arabidopsis thaliana and Closely Related Species Mol. Biol. Evol., April 1, 2004; 21(4): 659 - 669. [Abstract] [Full Text] [PDF]
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M. Koch and K.-G. Bernhardt Comparative biogeography of the cytotypes of annual Microthlaspi perfoliatum (Brassicaceae) in Europe using isozymes and cpDNA data: refugia, diversity centers, and postglacial colonization Am. J. Botany, January 1, 2004; 91(1): 115 - 124. [Abstract] [Full Text] [PDF]
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S. E. Ramos-Onsins, B. E. Stranger, T. Mitchell-Olds, and M. Aguade Multilocus Analysis of Variation and Speciation in the Closely Related Species Arabidopsis halleri and A. lyrata Genetics, January 1, 2004; 166(1): 373 - 388. [Abstract] [Full Text] [PDF]
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R. C. Moore and M. D. Purugganan The early stages of duplicate gene evolution PNAS, December 23, 2003; 100(26): 15682 - 15687. [Abstract] [Full Text] [PDF]
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S. I. Wright, N. Agrawal, and T. E. Bureau Effects of Recombination Rate and Gene Density on Transposable Element Distributions in Arabidopsis thaliana Genome Res., August 1, 2003; 13(8): 1897 - 1903. [Abstract] [Full Text] [PDF]
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D. Charlesworth, B. K. Mable, M. H. Schierup, C. Bartolome, and P. Awadalla Diversity and Linkage of Genes in the Self-Incompatibility Gene Family in Arabidopsis lyrata Genetics, August 1, 2003; 164(4): 1519 - 1535. [Abstract] [Full Text] [PDF]
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A. Kawabe and N. T. Miyashita DNA Polymorphism in Active Gene and Pseudogene of the Cytosolic Phosphoglucose Isomerase (PgiC) Loci in Arabidopsis halleri ssp. gemmifera Mol. Biol. Evol., July 1, 2003; 20(7): 1043 - 1050. [Abstract] [Full Text] [PDF]
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R. L. Hong, L. Hamaguchi, M. A. Busch, and D. Weigel Regulatory Elements of the Floral Homeotic Gene AGAMOUS Identified by Phylogenetic Footprinting and Shadowing PLANT CELL, June 1, 2003; 15(6): 1296 - 1309. [Abstract] [Full Text]
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D. S. Senchina, I. Alvarez, R. C. Cronn, B. Liu, J. Rong, R. D. Noyes, A. H. Paterson, R. A. Wing, T. A. Wilkins, and J. F. Wendel Rate Variation Among Nuclear Genes and the Age of Polyploidy in Gossypium Mol. Biol. Evol., April 1, 2003; 20(4): 633 - 643. [Abstract] [Full Text] [PDF]
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M. A. Koch, C. Dobes, and T. Mitchell-Olds Multiple Hybrid Formation in Natural Populations: Concerted Evolution of the Internal Transcribed Spacer of Nuclear Ribosomal DNA (ITS) in North American Arabis divaricarpa (Brassicaceae) Mol. Biol. Evol., March 1, 2003; 20(3): 338 - 350. [Abstract] [Full Text] [PDF]
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G. Blanc, K. Hokamp, and K. H. Wolfe A Recent Polyploidy Superimposed on Older Large-Scale Duplications in the Arabidopsis Genome Genome Res., February 1, 2003; 13(2): 137 - 144. [Abstract] [Full Text] [PDF]
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M. Barrier, C. D. Bustamante, J. Yu, and M. D. Purugganan Selection on Rapidly Evolving Proteins in the Arabidopsis Genome Genetics, February 1, 2003; 163(2): 723 - 733. [Abstract] [Full Text] [PDF]
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F. Chen, D. Tholl, J. C. D'Auria, A. Farooq, E. Pichersky, and J. Gershenzon Biosynthesis and Emission of Terpenoid Volatiles from Arabidopsis Flowers PLANT CELL, February 1, 2003; 15(2): 481 - 494. [Abstract] [Full Text] [PDF]
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C. Simillion, K. Vandepoele, M. C. E. Van Montagu, M. Zabeau, and Y. Van de Peer The hidden duplication past of Arabidopsisthaliana PNAS, October 15, 2002; 99(21): 13627 - 13632. [Abstract] [Full Text] [PDF]
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S. I. Wright, B. Lauga, and D. Charlesworth Rates and Patterns of Molecular Evolution in Inbred and Outbred Arabidopsis Mol. Biol. Evol., September 1, 2002; 19(9): 1407 - 1420. [Abstract] [Full Text] [PDF]
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D. Tian, H. Araki, E. Stahl, J. Bergelson, and M. Kreitman Signature of balancing selection in Arabidopsis PNAS, August 20, 2002; 99(17): 11525 - 11530. [Abstract] [Full Text] [PDF]
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M. E. Nasrallah, P. Liu, and J. B. Nasrallah Generation of Self-Incompatible Arabidopsis thaliana by Transfer of Two S Locus Genes from A. lyrata Science, July 12, 2002; 297(5579): 247 - 249. [Abstract] [Full Text] [PDF]
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