MBE Advance Access originally published online on January 11, 2007
Molecular Biology and Evolution 2007 24(3):868-874; doi:10.1093/molbev/msm004
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Research Articles |
No Evidence for an mtDNA Role in Sperm Motility: Data from Complete Sequencing of Asthenozoospermic Males





* Instituto de Patologia e Imunologia Molecular da Universidade do Porto, (IPATIMUP), Porto, Portugal
Medical Faculty, University of Porto, Portugal
Centro de Genética Humana Instituto Nacional de Saude Dr Ricardo Jorge, Lisboa, Portugal
Maternidade Dr Alfredo da Costa, Lisboa, Portugal
|| Institute of Integrative & Comparative Biology, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom
¶ Department of Statistics, University of Glasgow, Glasgow, United Kingdom
E-mail: lpereira{at}ipatimup.pt.
| Abstract |
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The first complete mitochondrial DNA (mtDNA) sequences (
16,569 bp) in 20 patients with asthenozoospermia and a comparison with 23 new complete mtDNA sequences in teratoasthenozoospermic individuals, confirmed no sharing of specific polymorphisms or specific mitochondrial lineages between these individuals. This is strong evidence against the accepted claim of a major role played by mtDNA in male fertility, once supported by haplogroup association studies based on the screening of hypervariable region I. The hypothesis of maternally driven selection acting in male reproductive success must thus be treated with caution.
Key Words: mtDNA complete sequences asthenozoospermia association
| Introduction |
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Several associations between complex traits and mitochondrial haplogroups have been described in recent years, such as haplogroup J and longevity (e.g., De Benedictis et al. 1999
Nevertheless, for most of those reported associations, conflicting results, or lack of confirmation have been described in other populations surveyed. Several explanations have been put forward to account for these contradictions, such as the following: 1) poorly matched case and control samples, a highly relevant factor due to the well-established population structure of mtDNA haplogroups (even at a microgeographic scale; Pereira, Goncalves, et al. 2005
), 2) the low resolution at which the mtDNA phylogeny is often assayed (Carelli et al. 2006
), and 3) the lack of power of the statistical methods employed to detect association, because the mtDNA haplogroup distribution is usually characterized by many very low frequency classes (Samuels et al. 2006
). In this last work, the authors showed that the small P value (P = 0.0311, declared significant at the 5% level) obtained by Ruiz-Pesini et al. (2000)
, in a test of association of haplogroup T with asthenozoospermia, is a considerable underestimate of the exact type I error (false-positive) rate estimated via permutation (P = 0.1435 and hence nonsignificant). Samuels et al. (2006)
also determined that to have a 90% power to detect a 10% change between cases and controls in the frequency of haplogroup H in a typical European population, approximately 6,000 cases and 6,000 controls would be required; even greater samples sizes would be needed for less common haplogroups or more subtle changes in haplogroup frequencies.
These results force us to rethink our methodologies for assessing the association of mtDNA haplogroups with complex traits. The huge sample sizes are, at present, unrealistic, indeed impossible to obtain in cases of rare diseases. Rather than assaying a small number of polymorphisms in large samples of cases and controls, another strategy for examining the mtDNA variation of individuals with certain phenotypes compared with well-matched controls is to sequence their whole-mtDNA genome (but in smaller numbers due to cost). This allows one to take a fully phylogenetic view of the data and guard against premature claims about the pathogenicity of haplogroup-defining polymorphisms, where frequency differences between cases and controls can well reflect poor matching (Bandelt et al. 2005
; Kong et al. 2006
). Of course, instead of a primary role, those haplogroup-defining polymorphisms can act in a synergistic way with other mtDNA mutations (as in the case of Leber hereditary optic neuropathy, LHON), but, in this case, studies with a phylogenetic focus would also be needed (Herrnstadt and Howell 2004
). Further, a phylogenetic analysis allows homoplasy and association through shared history to be identified, both of which can confound the search for causative alleles.
In the specific case of asthenozoospermia, to have a 90% power to detect a change of 10% frequency in haplogroup T, the number of patients and controls should be
40,000 each (derived from fig. 2D in Samuels et al. 2006
for haplogroup J, which has a similar frequency to haplogroup T in their representative European population), and this is unfeasible at present. In fact, although reduced sperm motility is observed in many subfertile males, it is usually associated with other sperm parameters, such as a low number of spermatozoa or abnormal sperm head morphology, which per se are also fertility conditioning, so that purely asthenozoospermic males have a rather low frequency. Because of this, we decided to take a different approach to the problem. We performed complete mtDNA sequencing in a sample of 20 (pure) asthenozoospermic males from Portugal, as well as in 23 teratoasthenozoospermic (defined by fewer than 30% spermatozoa with normal head morphology and reduced sperm motility) as another group for comparison. Patients were selected from the same infertility unit (Maternidade Dr Alfredo da Costa) so that geographical matching criteria were addressed (given the mtDNA microstructure observed in Portugal; Pereira, Goncalves, et al. 2005
).
So far as we know, this study is the first to address the following questions surrounding the issue of mtDNA association with asthenozoospermia: Is any particular mtDNA mutation present in asthenozoospermic males? Do asthenozoospermic males carry more replacement or tRNA mutations than teratoasthenozoospermic males? Do asthenozoospermic males belonging to certain mtDNA haplogroups present any differences from controls in other populations sharing the same ancestry?
| Materials and Methods |
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Samples
A total of 20 asthenozoospermic and 23 teratoasthenozoospermic males were selected from a database of infertile males from Portugal. The infertile patients included in the database were picked up in a hierarchical 2-step survey. After 1) andrological and hormonal evaluation, only patients with idiopathic infertility, that is, absence of history of hypospadias, urinary infection, epididymitis, orchitis, varicocele, prostatic abnormalities, testis tumors, and testicular maldescent proceeded to 2) further chromosomal analyses, and only the patients having a 46, XY normal karyotype, and no AZFa (markers DBY and DFFRY), AZFb (markers RBMY1, sY1224, sY134, sY143, and sY119), and AZFc (markers sY283, RRM3, and sY254) microdeletions were included in the database. Sperm analysis was performed according to World Health Organization's guidelines (WHO 1992
Complete mtDNA Sequencing
mtDNA was amplified using 32 overlapping fragments basically as described elsewhere (Maca-Meyer et al. 2001
). After purification, the forward primers were used for the sequencing, and in some cases, also the reverse primers (in the presence of poly-C stretches, when polymorphisms A574C and T16189C occur). Sequencing was performed on a 3100 DNA Analyzer (AB, Applied Biosystems, Foster City, CA), and the resulting sequences were analyzed with SeqScape (AB, Applied Biosystems) and BioEdit version 7.0.4.1
[EC]
(Hall et al. 1999
), by 2 independent investigators. In cases of ambiguous base calling, polymerase chain reaction and sequencing reactions were repeated. Furthermore, the norms of rechecking both the haplogroup-defining polymorphisms, known from the literature, as well as the private ones (Bandelt et al. 2005
) were followed. Mutations were scored relative to the reference sequence (rCRS; Andrews et al. 1999
). The 43 complete mtDNA sequences have been deposited in GenBank (accession numbers EF177405EF177447).
Nomenclature
For haplogroup and subhaplogroup affiliation of the samples, the most recent phylogenetic data were followed: Achilli et al. (2004)
for H; Behar et al. (2006)
for K; Palanichamy et al. (2004)
for J, L2, R1, T, and V; Achilli et al. (2005)
and Palanichamy et al. (2004)
for U; Kivisild et al. (2006)
for I and M1; and Reidla et al. (2003)
for X. Numbers 116569 refer to the position of the mutation in the rCRS.
Statistical Analyses
Analysis of molecular variance (AMOVA) and nucleotide diversity estimates were calculated by using the software Arlequin version 2.0 (Schneider et al. 2000
). Fisher's exact tests were applied to 2 x 2 contingency tables in DnaSP 3.51 (Rozas J and Rozas R 1999
) and to haplogroup distributions in asthenozoospermic versus teratoasthenozoospermic individuals.
To construct the mtDNA phylogeny, only the more slowly evolving coding region of the molecule between nucleotide positions 577 and 16023 was considered. A preliminary network analysis (Bandelt et al. 1995
) led to a suggested branching order for the tree. Assuming the HKY85 mutation model with gamma-distributed rates (approximated by a discrete distribution with 32 categories), PAML 3.13 (Yang 1997
) was used to estimate branch lengths and parameters of the mutation model. In addition, it was used to check the molecular clock hypothesis, via a likelihood ratio test.
| Results |
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Haplogroup representation (fig. 1) was highly diverse both in asthenozoospermic and teratoasthenozoospermic males, ranging from the common European haplogroups to rarer ones (I1a, M1, and R1) and the sub-Saharan L2a1, which does appear in a higher frequency in Portugal than in the rest of Europe (Pereira et al. 2004
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A total of 287 substitution events in the coding region (positions 57716023) were observed in the 43 individuals sequenced. A total of 17 positions showed homoplasy (table 1) and, of these, 4 of the 7 replacement substitutions involved the threonine codon, which has been shown to be implicated in 5 out of 6 replacement substitutions with recurrence over 4 times in a worldwide mtDNA phylogeny (Kivisild et al. 2006
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The sample TA19 does not have the defining control polymorphism at position 16223, making this lineage a peculiar one inside M1. Other M1 samples matching TA19 in the first hypervariable segment have been observed: 1 in Portugal (Pereira et al. 2004
The spectrum of transversions also followed the usual bias toward higher levels to A and very low ones to G, a pattern that has been used to identify problematic data sets (Bandelt et al. 2006
). We observed the following transversion spectrum: 6 to A, 3 to C, 2 to T, and 1 to G.
When we compared the ratio of synonymous to replacement substitutions (table 2) in the haplogroup-defining with nonhaplogroup-defining branches in the tree, no statistically significant differences were observed whether considering all the samples together (one-tailed Fisher's exact test P = 0.185), only the asthenozoospermic (P = 0.228), or only the teratoasthenozoospermic (P = 0.284). Our classification of sequences was rather detailed, so that even quite recent branches were classified as haplogroup defining in this study. Due to that finer classification, the results obtained here show a tendency to a more even distribution of the synonymous and replacement substitutions between the haplogroup-defining and nonhaplogroup-defining ones than other studies (e.g., Elson et al. 2006
). But it is clear that the younger branches of the tree bear more replacement substitutions than the internal ones (Kivisild et al. 2006
), both in asthenozoospermic and teratoasthenozoospermic individuals.
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Because Ruiz-Pesini et al. (2000)
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Most of the mtDNA substitutions for which a pathogenic role has been convincingly demonstrated are located in tRNAs (McFarland et al. 2004
The hypothesis of a uniform molecular clock is rejected (P = 0.013) when analyzing all of our data set, showing that some branches of the phylogenetic tree do seem to bear more or less substitutions than expected. However, for the individual analyses of asthenozoospermic and teratoasthenozoospermic individuals no departure from the molecular clock could be detected (P = 0.086 and P = 0.227, respectively). Possibly contributing to the rejection of the clock hypothesis when both sets are considered together is the fact that the asthenozoospermic group has slightly more diversity than the teratoasthenozoospermic one. Nucleotide diversities were 0.00137 ± 0.00072 and 0.00100 ± 0.00053 in asthenozoospermic and in teratoasthenozoospermic samples, respectively, for the coding region, and 0.00167 ± 0.00087 and 0.00128 ± 0.00067, respectively, for the complete sequence. Nonetheless, the estimated percentage of variation between the asthenozoospermic and teratoasthenozoospermic populations is not significantly different from zero in an AMOVA (P value = 0.10 for coding and 0.20 for complete sequence).
| Discussion |
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To date, the association between mtDNA haplogroup T and asthenozoospermia remains one of the few that has not been tested in another population. This is probably due to the work of Ruiz-Pesini et al. (2000)
In our study, the samples from the infertile males with less than 50% progressive spermatozoa (the asthenozoospermic ones) belonged to diverse lineages of several haplogroups: L2a1, I1a, X2b, both T1 and T2, J1c, U5a, K1 (K1*, K1a4, K1b1a, and K1c1), V1a, H*, and H1. Note that the first example of a sub-Saharan L2a lineage in asthenozoospermic males can hardly be reconciled with the driving selective force of cold adaptation advanced in (Montiel-Soza et al. 2006). No peculiar mtDNA mutation was shared between the asthenozoospermic males and was also absent in teratoasthenozoospermic males. The pattern of replacement substitutions, as well as those in tRNAs and their location in the genome, is indistinguishable from the pattern typically observed in population surveys at a European (Elson et al. 2004
) or a worldwide level (Kivisild et al. 2006
), as well as in the controls studied here. No systematic differences were observed between haplotypes from asthenozoospermic samples and those from population surveys. In summary, the first 20 complete mtDNA sequences in asthenozoospermic males did not allow the "isolation of well-defined genetic backgrounds that are positively or negatively associated with asthenozoospermia," as hoped by Ruiz-Pesini et al. (2000)
.
So, where do we stand at this moment on the role of mtDNA in sperm motility? Clearly, no firm association with any mtDNA haplogroup remains after the reanalysis of Samuels et al. (2006)
. These authors also present data that do undermine the design of any haplogroup association study for asthenozoospermia. The not so frequent pure asthenozoospermia phenotype in conjugation with the restrictions of population structure for mtDNA make it well-nigh impossible to attain the numbers of patients needed for a powerful association study.
The lack of power to detect a positive association between a mtDNA haplogroup and asthenozoospermia is not necessarily incompatible with detecting a role of mtDNA in asthenozoospermia. A recurrent mutation, present exclusively in asthenozoospermic males, could be responsible for this phenotype, as happens for the MELAS (mitochondrial myopathy, encephalopathy, lactic acidosis, and strokeline episodes syndrome) substitution 3243 (Torroni et al. 2003
). The first complete mtDNA sequences in 20 patients reported here show, however, that this is not the case.
An even greater role of mtDNA in sperm motility could still be hypothesized, as the data from Montiel-Sosa et al. (2006)
seems to suggest. Instead of 1 haplogroup being implicated in sperm motility, several lineages could display lower sperm motilities. How could this be explained? It is known that younger branches of the mtDNA phylogenetic tree bear more replacement substitutions, potentially mildly deleterious, which would ultimately likely be removed from the population (Ruiz-Pesini et al. 2004
; Kivisild et al. 2006
). This seems to be a pattern shared by all mtDNA haplogroups (Kivisild et al. 2006
) and can be so strong that differential rates between lineages inside haplogroup L2 have been reported (Torroni et al. 2001
; Howell et al. 2004
). These mildly deleterious substitutions potentially uncouple slightly the OXPHOS activity (Ruiz-Pesini et al. 2004
), being of greater limitation to cells with a lower mtDNA content, such as spermatozoa. Our data show that the asthenozoospermic pool presented slightly more substitutions than the teratoasthenozoospermic one, but statistical significance was not reached and the balance between synonymous and replacement substitutions maintained. One way of ascertaining the importance of this higher proportion of substitutions would be to do an in vitro time series evaluation of sperm motility in sperm presenting defects in the mitochondrial gamma-polymerase exonuclease domain. This effect on sperm motility was, unfortunately, not evaluated in knockin mice that express a proofreading-deficient version of polymerase gamma (Trifunovic et al. 2004
), but an effect on male fertility was ascertained with testes considerably smaller from 12 weeks of age onward; reduced sperm content of the epididymis and severe testicular tubular degeneration with complete absence of sperm in 40-week-old mutator mice.
However, in recent years, independent experimental data have been providing evidence against a major role for mtDNA in sperm motility. It has been shown that 2 processes contribute to producing the energy necessary for sperm motility: 1) the OXPHOS performed by mitochondria localized in the sperm midpiece and 2) a local glycolysis in the sperm principal piece. It appears that the first process is far less important than the second (see revision in Luconi et al. 2006
). In fact, knockout mice for the sperm-specific glycolytic enzyme (glyceraldehyde 3-phosphatase dehydrogenase S), showing unaffected OXPHOS, produced only 10.4% of the adenosine triphosphate necessary for sperm motility compared with wild mice (Miki et al. 2004
). Additionally, mito-mice carrying intermediate levels of the common deletion (
4,696 bp) displayed oligospermia and asthenozoospermia with abnormalities in midpiece and nucleus (Nakada et al. 2006
). The authors concluded that the asthenozoospermia in mito-mice was caused by morphological abnormalities rather than mitochondrial respiration deficiency in sperm.
One thing is clear, asthenozoospermia is a complex phenotype and mtDNA is only one (at most) of the factors contributing to it. Factors as divergent as calcium intake, osmotic balance, and protein phosphorylation (Luconi et al. 2006
) are major conditions for sperm motility efficiency, and because they act at an ultrastructural level, they are not discernable in current diagnosis. At this stage, a better subcharacterization of the complex category "asthenozoospermic" is vital for any further evaluation on the contribution of mitochondria to sperm motility. Without question, asthenozoospermia must be moved from the group of strong positive mtDNA association to the group of complex traits where associations with mtDNA are not at all clear-cut.
In general, although the demonstration of the lack of power to detect mtDNA associations with complex traits seems to take us backwards in the seemingly promising field of mitochondrial genetics, we are slowly advancing onto much more solid ground. Getting rid of superfluous background noise due to false-positive associations and claims of pathogenicity for neutral polymorphisms is essential for the consolidation of the field. We are now at a stage of collecting and refining mtDNA phylogenies for complex traits, which will lead (if we are optimistic) to the emergence of particular signals in certain branches of the phylogeny. This may test the patience in the case of really complex phenotypes such as Alzheimer's disease (Elson et al. 2006
), but it seems already promising in the only clear-cut association, between LHON mutations and haplogroup J background (Carelli et al. 2006
). Better diagnosis strategies are demanded for faster and more secure conclusions in the field of male fertility.
| Supplementary Material |
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Supplementary tables 1 and 2 are available at Molecular Biology and Evolution online (http://www.mbe.oxfordjournals.org/).
| Acknowledgements |
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We wish to thank all the patients who agreed to participate in this study. We thank Hans-Jürgen Bandelt for further checking our complete sequences. L.P. had a grant support from Fundação Calouste Gulbenkian. Instituto de Patologia e Imunologia Molecular da Universidade do Porto is supported by Programa Operacional Ciência, Tecnologia e Inovação (POCTI) and Quadro Comunitario de Apoio III. This work was partially supported by Fundação para a Ciência e a TecnologiaPrograma de Financiamento Plirianual do Centro de Investigação de Genética Molecular Humana and by Research Project POCTI/SAU/97/2001 from Fundação para a Ciência e a Tecnologia.
| Footnotes |
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Connie Mulligan, Associate Editor
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