Antiquity and Evolution of the MADS-Box Gene Family Controlling Flower Development in Plants
Mol Biol Evol
Nam et al. 20 (9): 1435.
Supplementary Material
Supplemental material:
S-1. Datafile (mega format) for Figure 2 and NJ trees with p-distance and PC-gamma distance (power point)
GenBank accession number or TIGR locus number is included in the datafile
Three parts designated as M-, I-, K-domains in this datafile were used for Figure 2
S-2. Datafile (mega format) for Figure 5 (87 MADS-domain sequences from plants and animals)
GenBank accession number, TIGR locus number, or contig number is included in the datafile
{NS} = nonseed plants, {Ara} = Arabidopsis thaliana, {Rice} = Oryza sativa
S-3. Phylogenetic tree of 56 MADS-domain sequences from plants and animals including the outgroup, LAMB1
NJ tree with 56 sequences
S-4. Maximum-Likehood trees for Figure 2 (using PROTML)
* 24 sequences
- Poisson model
- JTT model
- Data file
cf) bootstrap values were obtained from a restricted number of tree topologies (around 100 topologies)
S-5. Maximum-Parsimony tree for Figure 2 (using PAUP*)
* 24 sequences
- Tree, data file
- (TBR search/500 bootstrap)
S-6. Time estimates by the Penalized likelihood method
Supplemental table (table 2)
*See Supplemental index link for detailed description of supplementary files for this article
Files in this Data Supplement:
