Molecular Biology and Evolution, Vol 9, 138-151, Copyright © 1992 by Society for Molecular Biology and Evolution
RR Hudson, DD Boos and NL Kaplan
A statistical test for detecting genetic differentiation of subpopulations
is described that uses molecular variation in samples of DNA sequences from
two or more localities. The statistical significance of the test is
determined with Monte Carlo simulations. The power of the test to detect
genetic differentiation in a selectively neutral Wright-Fisher island model
depends on both sample size and the rates of migration, mutation, and
recombination. It is found that the power of the test is substantial with
samples of size 50, when 4Nm less than 10, where N is the subpopulation
size and m is the fraction of migrants in each subpopulation each
generation. More powerful tests are obtained with genes with recombination
than with genes without recombination.
ORIGINAL ARTICLE
A statistical test for detecting geographic subdivision
Department of Ecology and Evolutionary Biology, University of California, Irvine 92717.
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U. Lagercrantz, M. Kruskopf Osterberg, and M. Lascoux Sequence Variation and Haplotype Structure at the Putative Flowering-Time Locus COL1 of Brassica nigra Mol. Biol. Evol., September 1, 2002; 19(9): 1474 - 1482. [Abstract] [Full Text] [PDF]
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J. Vieira Two Divergent Species of the Virilis Group, Drosophila littoralis and Drosophila virilis, Share a Replacement Polymorphism at the fused Locus Mol. Biol. Evol., April 1, 2002; 19(4): 579 - 581. [Full Text] [PDF]
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R. Wang, L. Zheng, Y. T. Toure, T. Dandekar, and F. C. Kafatos When genetic distance matters: Measuring genetic differentiation at microsatellite loci in whole-genome scans of recent and incipient mosquito species PNAS, September 11, 2001; 98(19): 10769 - 10774. [Abstract] [Full Text] [PDF]
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D. A. Filatov, V. Laporte, C. Vitte, and D. Charlesworth DNA Diversity in Sex-Linked and Autosomal Genes of the Plant Species Silene latifolia and Silene dioica Mol. Biol. Evol., August 1, 2001; 18(8): 1442 - 1454. [Abstract] [Full Text] [PDF]
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J. Rozas, M. Gullaud, G. Blandin, and M. Aguade DNA Variation at the rp49 Gene Region of Drosophila simulans: Evolutionary Inferences From an Unusual Haplotype Structure Genetics, July 1, 2001; 158(3): 1147 - 1155. [Abstract] [Full Text] [PDF]
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J. Vieira, B. F. McAllister, and B. Charlesworth Evidence for Selection at the fused1 Locus of Drosophila americana Genetics, May 1, 2001; 158(1): 279 - 290. [Abstract] [Full Text]
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H. Kudoh and D. F. Whigham A genetic analysis of hydrologically dispersed seeds of Hibiscus moscheutos (Malvaceae) Am. J. Botany, April 1, 2001; 88(4): 588 - 593. [Abstract] [Full Text]
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 I. M. Rouzine, A. Rodrigo, and J. M. Coffin Transition between Stochastic Evolution and Deterministic Evolution in the Presence of Selection: General Theory and Application to Virology Microbiol. Mol. Biol. Rev., March 1, 2001; 65(1): 151 - 185. [Abstract] [Full Text] [PDF]
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D. J. Begun, P. Whitley, B. L. Todd, H. M. Waldrip-Dail, and A. G. Clark Molecular Population Genetics of Male Accessory Gland Proteins in Drosophila Genetics, December 1, 2000; 156(4): 1879 - 1888. [Abstract] [Full Text]
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A. Munte, M. Aguade, and C. Segarra Nucleotide Variation at the yellow Gene Region is not Reduced in Drosophila subobscura: A Study in Relation to Chromosomal Polymorphism Mol. Biol. Evol., December 1, 2000; 17(12): 1942 - 1955. [Abstract] [Full Text] [PDF]
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P. Andolfatto and M. Przeworski A Genome-Wide Departure From the Standard Neutral Model in Natural Populations of Drosophila Genetics, September 1, 2000; 156(1): 257 - 268. [Abstract] [Full Text]
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R. R. Hudson A New Statistic for Detecting Genetic Differentiation Genetics, August 1, 2000; 155(4): 2011 - 2014. [Abstract] [Full Text]
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A. Llopart and M. Aguadé Nucleotide Polymorphism at the RpII215 Gene in Drosophila subobscura: Weak Selection on Synonymous Mutations Genetics, July 1, 2000; 155(3): 1245 - 1252. [Abstract] [Full Text]
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S. Yi and B. Charlesworth Contrasting Patterns of Molecular Evolution of the Genes on the New and Old Sex Chromosomes of Drosophila miranda Mol. Biol. Evol., May 1, 2000; 17(5): 703 - 717. [Abstract] [Full Text] [PDF]
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P. Andolfatto and M. Kreitman Molecular Variation at the In(2L)t Proximal Breakpoint Site in Natural Populations of Drosophila melanogaster and D. simulans Genetics, April 1, 2000; 154(4): 1681 - 1691. [Abstract] [Full Text]
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D. Posada, K. A. Crandall, M. Nguyen, J. C. Demma, and R. P. Viscidi Population Genetics of the porB Gene of Neisseria gonorrhoeae: Different Dynamics in Different Homology Groups Mol. Biol. Evol., March 1, 2000; 17(3): 423 - 436. [Abstract] [Full Text] [PDF]
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P. Andolfatto, J. D. Wall, and M. Kreitman Unusual Haplotype Structure at the Proximal Breakpoint of In(2L)t in a Natural Population of Drosophila melanogaster Genetics, November 1, 1999; 153(3): 1297 - 1311. [Abstract] [Full Text]
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D. A. Filatov and D. Charlesworth DNA Polymorphism, Haplotype Structure and Balancing Selection in the Leavenworthia PgiC Locus Genetics, November 1, 1999; 153(3): 1423 - 1434. [Abstract] [Full Text]
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A. Navarro-Sabate, M. Aguade, and C. Segarra The Relationship Between Allozyme and Chromosomal Polymorphism Inferred From Nucleotide Variation at the Acph-1 Gene Region of Drosophila subobscura Genetics, October 1, 1999; 153(2): 871 - 889. [Abstract] [Full Text] [PDF]
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M. T. Hamblin and M. Veuille Population Structure Among African and Derived Populations of Drosophila simulans: Evidence for Ancient Subdivision and Recent Admixture Genetics, September 1, 1999; 153(1): 305 - 317. [Abstract] [Full Text]
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