Molecular Biology and Evolution, Vol 16, 37-48, Copyright © 1999 by Society for Molecular Biology and Evolution
HJ Bandelt, P Forster and A Rohl
Reconstructing phylogenies from intraspecific data (such as human
mitochondrial DNA variation) is often a challenging task because of large
sample sizes and small genetic distances between individuals. The resulting
multitude of plausible trees is best expressed by a network which displays
alternative potential evolutionary paths in the form of cycles. We present
a method ("median joining" [MJ]) for constructing networks from
recombination-free population data that combines features of Kruskal's
algorithm for finding minimum spanning trees by favoring short connections,
and Farris's maximum-parsimony (MP) heuristic algorithm, which sequentially
adds new vertices called "median vectors", except that our MJ method does
not resolve ties. The MJ method is hence closely related to the earlier
approach of Foulds, Hendy, and Penny for estimating MP trees but can be
adjusted to the level of homoplasy by setting a parameter epsilon. Unlike
our earlier reduced median (RM) network method, MJ is applicable to
multistate characters (e.g., amino acid sequences). An additional feature
is the speed of the implemented algorithm: a sample of 800 worldwide mtDNA
hypervariable segment I sequences requires less than 3 h on a Pentium 120
PC. The MJ method is demonstrated on a Tibetan mitochondrial DNA RFLP data
set.
ORIGINAL ARTICLE
Median-joining networks for inferring intraspecific phylogenies
Mathematisches Seminar, Universitat Hamburg, Germany.
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  F. Pereira, S. Queiros, L. Gusmao, I. J. Nijman, E. Cuppen, J. A. Lenstra, E. Consortium, S. J.M. Davis, F. Nejmeddine, and A. Amorim Tracing the History of Goat Pastoralism: New Clues from Mitochondrial and Y Chromosome DNA in North Africa Mol. Biol. Evol., December 1, 2009; 26(12): 2765 - 2773. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 B. Crestanello, E. Pecchioli, C. Vernesi, S. Mona, N. Martinkova, M. Janiga, H. C. Hauffe, and G. Bertorelle The Genetic Impact of Translocations and Habitat Fragmentation in Chamois (Rupicapra) spp. J. Hered., November 1, 2009; 100(6): 691 - 708. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Y. Xue, X. Zhang, N. Huang, A. Daly, C. J. Gillson, D. G. MacArthur, B. Yngvadottir, A. C. Nica, C. Woodwark, Y. Chen, et al. Population Differentiation as an Indicator of Recent Positive Selection in Humans: An Empirical Evaluation Genetics, November 1, 2009; 183(3): 1065 - 1077. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 B. Ferwerda, G. Ferwerda, T. S. Plantinga, J. A. Willment, A. B. van Spriel, H. Venselaar, C. C. Elbers, M. D. Johnson, A. Cambi, C. Huysamen, et al. Human Dectin-1 Deficiency and Mucocutaneous Fungal Infections N. Engl. J. Med., October 29, 2009; 361(18): 1760 - 1767. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. Beja-Pereira, B. Bricker, S. Chen, C. Almendra, P. J. White, and G. Luikart DNA Genotyping Suggests that Recent Brucellosis Outbreaks in the Greater Yellowstone Area Originated from Elk J. Wildl. Dis., October 1, 2009; 45(4): 1174 - 1177. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. G. Collevatti, S. G. Rabelo, and R. F. Vieira Phylogeography and disjunct distribution in Lychnophora ericoides (Asteraceae), an endangered cerrado shrub species Ann. Bot., September 1, 2009; 104(4): 655 - 664. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Ferrer-Admetlla, M. Sikora, H. Laayouni, A. Esteve, F. Roubinet, A. Blancher, F. Calafell, J. Bertranpetit, and F. Casals A Natural History of FUT2 Polymorphism in Humans Mol. Biol. Evol., September 1, 2009; 26(9): 1993 - 2003. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. C. Friedel and R. Zimmer Identifying the topology of protein complexes from affinity purification assays Bioinformatics, August 15, 2009; 25(16): 2140 - 2146. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 V. N. Hawkins, S. M. Suzuki, K. Rungsihirunrat, H. C. Hapuarachchi, A. Maestre, K. Na-Bangchang, and C. H. Sibley Assessment of the Origins and Spread of Putative Resistance-Conferring Mutations in Plasmodium vivax Dihydropteroate Synthase Am J Trop Med Hyg, August 1, 2009; 81(2): 348 - 355. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. F. Fay, R. Bone, P. Cook, I. Kahandawala, J. Greensmith, S. Harris, H. Ae. Pedersen, M. J. Ingrouille, and C. Lexer Genetic diversity in Cypripedium calceolus (Orchidaceae) with a focus on north-western Europe, as revealed by plastid DNA length polymorphisms Ann. Bot., August 1, 2009; 104(3): 517 - 525. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 F. Zhao, J. Qi, and S. C. Schuster Tracking the past: Interspersed repeats in an extinct Afrotherian mammal, Mammuthus primigenius Genome Res., August 1, 2009; 19(8): 1384 - 1392. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Mona, K. E. Grunz, S. Brauer, B. Pakendorf, L. Castri, H. Sudoyo, S. Marzuki, R. H. Barnes, J. Schmidtke, M. Stoneking, et al. Genetic Admixture History of Eastern Indonesia as Revealed by Y-Chromosome and Mitochondrial DNA Analysis Mol. Biol. Evol., August 1, 2009; 26(8): 1865 - 1877. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 F. Antonacci, J. M. Kidd, T. Marques-Bonet, M. Ventura, P. Siswara, Z. Jiang, and E. E. Eichler Characterization of six human disease-associated inversion polymorphisms Hum. Mol. Genet., July 15, 2009; 18(14): 2555 - 2566. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 B. Ferwerda, S. Alonso, K. Banahan, M. B. B. McCall, E. J. Giamarellos-Bourboulis, B. P. Ramakers, M. Mouktaroudi, P. R. Fain, N. Izagirre, D. Syafruddin, et al. Functional and genetic evidence that the Mal/TIRAP allele variant 180L has been selected by providing protection against septic shock PNAS, June 23, 2009; 106(25): 10272 - 10277. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Fumagalli, U. Pozzoli, R. Cagliani, G. P. Comi, S. Riva, M. Clerici, N. Bresolin, and M. Sironi Parasites represent a major selective force for interleukin genes and shape the genetic predisposition to autoimmune conditions J. Exp. Med., June 8, 2009; 206(6): 1395 - 1408. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 F. Casals, A. Ferrer-Admetlla, M. Sikora, A. Ramirez-Soriano, T. Marques-Bonet, S. Despiau, F. Roubinet, F. Calafell, J. Bertranpetit, and A. Blancher Human pseudogenes of the ABO family show a complex evolutionary dynamics and loss of function Glycobiology, June 1, 2009; 19(6): 583 - 591. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Yasukochi, S. Nishida, S.-H. Han, T. Kurosaki, M. Yoneda, and H. Koike Genetic Structure of the Asiatic Black Bear in Japan Using Mitochondrial DNA Analysis J. Hered., May 1, 2009; 100(3): 297 - 308. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. B. Miranda, L. F. B. Oliveira, J. Andrades-Miranda, A. Langguth, S. M. Callegari-Jacques, and M. S. Mattevi Phylogenetic and Phylogeographic Patterns in Sigmodontine Rodents of the Genus Oligoryzomys J. Hered., May 1, 2009; 100(3): 309 - 321. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. R. Omilian and M. Lynch Patterns of Intraspecific DNA Variation in the Daphnia Nuclear Genome Genetics, May 1, 2009; 182(1): 325 - 336. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. E. King and M. A. Jobling Founders, Drift, and Infidelity: The Relationship between Y Chromosome Diversity and Patrilineal Surnames Mol. Biol. Evol., May 1, 2009; 26(5): 1093 - 1102. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Mukherjee, N. Sarkar-Roy, D. K. Wagener, and P. P. Majumder Signatures of natural selection are not uniform across genes of innate immune system, but purifying selection is the dominant signature PNAS, April 28, 2009; 106(17): 7073 - 7078. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. G. McCracken, M. Bulgarella, K. P. Johnson, M. K. Kuhner, J. Trucco, T. H. Valqui, R. E. Wilson, and J. L. Peters Gene Flow in the Face of Countervailing Selection: Adaptation to High-Altitude Hypoxia in the {beta}A Hemoglobin Subunit of Yellow-Billed Pintails in the Andes Mol. Biol. Evol., April 1, 2009; 26(4): 815 - 827. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T.S. MacFie, E. Nerrienet, N.G. de Groot, R.E. Bontrop, and N.I. Mundy Patterns of Diversity in HIV-Related Loci among Subspecies of Chimpanzee: Concordance at CCR5 and Differences at CXCR4 and CX3CR1 Mol. Biol. Evol., April 1, 2009; 26(4): 719 - 727. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. A. Medina, F. Torres-Perez, H. Galeno, M. Navarrete, P. A. Vial, R. E. Palma, M. Ferres, J. A. Cook, and B. Hjelle Ecology, Genetic Diversity, and Phylogeographic Structure of Andes Virus in Humans and Rodents in Chile J. Virol., March 15, 2009; 83(6): 2446 - 2459. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Friedrichs, C. Zugck, G.-J. Rauch, B. Ivandic, D. Weichenhan, M. Muller-Bardorff, B. Meder, N. E. El Mokhtari, V. Regitz-Zagrosek, R. Hetzer, et al. HBEGF, SRA1, and IK: Three cosegregating genes as determinants of cardiomyopathy Genome Res., March 1, 2009; 19(3): 395 - 403. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Ginja, L. Telo da Gama, and M. C. T. Penedo Y Chromosome Haplotype Analysis in Portuguese Cattle Breeds Using SNPs and STRs J. Hered., March 1, 2009; 100(2): 148 - 157. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. C. S. Ramos, J. P. De Lemos-Filho, and M. B. Lovato Phylogeographical Structure of the Neotropical Forest Tree Hymenaea courbaril (Leguminosae: Caesalpinioideae) and Its Relationship with the Vicariant Hymenaea stigonocarpa from Cerrado J. Hered., March 1, 2009; 100(2): 206 - 216. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Krosby and S. Rohwer A 2000 km genetic wake yields evidence for northern glacial refugia and hybrid zone movement in a pair of songbirds Proc R Soc B, February 22, 2009; 276(1657): 615 - 621. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Fumagalli, R. Cagliani, U. Pozzoli, S. Riva, G. P. Comi, G. Menozzi, N. Bresolin, and M. Sironi Widespread balancing selection and pathogen-driven selection at blood group antigen genes Genome Res., February 1, 2009; 19(2): 199 - 212. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Rodriguez, S. Hammer, T. Perez, F. Suchentrunk, R. Lorenzini, J. Michallet, N. Martinkova, J. Albornoz, and A. Dominguez Cytochrome b Phylogeography of Chamois (Rupicapra spp.). Population Contractions, Expansions and Hybridizations Governed the Diversification of the Genus J. Hered., January 1, 2009; 100(1): 47 - 55. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. M. Henn, C. R. Gignoux, M. W. Feldman, and J. L. Mountain Characterizing the Time Dependency of Human Mitochondrial DNA Mutation Rate Estimates Mol. Biol. Evol., January 1, 2009; 26(1): 217 - 230. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Rull, L. Nagirnaja, V.-M. Ulander, P. Kelgo, T. Margus, M. Kaare, K. Aittomaki, and M. Laan Chorionic Gonadotropin {beta}-Gene Variants Are Associated with Recurrent Miscarriage in Two European Populations J. Clin. Endocrinol. Metab., December 1, 2008; 93(12): 4697 - 4706. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 E. Sandanaraj, S. Lal, V. Selvarajan, L. L. Ooi, Z. W. Wong, N. S. Wong, P. C. S. Ang, E. J.D. Lee, and B. Chowbay PXR Pharmacogenetics: Association of Haplotypes with Hepatic CYP3A4 and ABCB1 Messenger RNA Expression and Doxorubicin Clearance in Asian Breast Cancer Patients Clin. Cancer Res., November 1, 2008; 14(21): 7116 - 7126. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. Davison and S. Chiba Contrasting response to Pleistocene climate change by ground-living and arboreal Mandarina snails from the oceanic Hahajima archipelago Phil Trans R Soc B, October 27, 2008; 363(1508): 3391 - 3400. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. X. Pico, B. Mendez-Vigo, J. M. Martinez-Zapater, and C. Alonso-Blanco Natural Genetic Variation of Arabidopsis thaliana Is Geographically Structured in the Iberian Peninsula Genetics, October 1, 2008; 180(2): 1009 - 1021. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Jones, F. J. Leigh, I. Mackay, M. A. Bower, L. M.J. Smith, M. P. Charles, G. Jones, M. K. Jones, T. A. Brown, and W. Powell Population-Based Resequencing Reveals That the Flowering Time Adaptation of Cultivated Barley Originated East of the Fertile Crescent Mol. Biol. Evol., October 1, 2008; 25(10): 2211 - 2219. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Vigfusdottir, S. Palsson, and A. Ingolfsson Hybridization of glaucous gull (Larus hyperboreus) and herring gull (Larus argentatus) in Iceland: mitochondrial and microsatellite data Phil Trans R Soc B, September 12, 2008; 363(1505): 2851 - 2860. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. H Roed, O. Flagstad, M. Nieminen, O. Holand, M. J Dwyer, N. Rov, and C. Vila Genetic analyses reveal independent domestication origins of Eurasian reindeer Proc R Soc B, August 22, 2008; 275(1645): 1849 - 1855. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. M. Henn, C. Gignoux, A. A. Lin, P. J. Oefner, P. Shen, R. Scozzari, F. Cruciani, S. A. Tishkoff, J. L. Mountain, and P. A. Underhill Y-chromosomal evidence of a pastoralist migration through Tanzania to southern Africa PNAS, August 5, 2008; 105(31): 10693 - 10698. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. Ferrer-Admetlla, E. Bosch, M. Sikora, T. Marques-Bonet, A. Ramirez-Soriano, A. Muntasell, A. Navarro, R. Lazarus, F. Calafell, J. Bertranpetit, et al. Balancing Selection Is the Main Force Shaping the Evolution of Innate Immunity Genes J. Immunol., July 15, 2008; 181(2): 1315 - 1322. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Kayser, Y. Choi, M. van Oven, S. Mona, S. Brauer, R. J. Trent, D. Suarkia, W. Schiefenhovel, and M. Stoneking The Impact of the Austronesian Expansion: Evidence from mtDNA and Y Chromosome Diversity in the Admiralty Islands of Melanesia Mol. Biol. Evol., July 1, 2008; 25(7): 1362 - 1374. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. M. Mateiu and B. H. Rannala Bayesian Inference of Errors in Ancient DNA Caused by Postmortem Degradation Mol. Biol. Evol., July 1, 2008; 25(7): 1503 - 1511. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. K. Mehlotra, G. Mattera, M. J. Bockarie, J. D. Maguire, J. K. Baird, Y. D. Sharma, M. Alifrangis, G. Dorsey, P. J. Rosenthal, D. J. Fryauff, et al. Discordant Patterns of Genetic Variation at Two Chloroquine Resistance Loci in Worldwide Populations of the Malaria Parasite Plasmodium falciparum Antimicrob. Agents Chemother., June 1, 2008; 52(6): 2212 - 2222. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. F. de Alencar Figueiredo, C. Calatayud, C. Dupuits, C. Billot, J.-F. Rami, D. Brunel, X. Perrier, B. Courtois, M. Deu, and J.-C. Glaszmann Phylogeographic Evidence of Crop Neodiversity in Sorghum Genetics, June 1, 2008; 179(2): 997 - 1008. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. Werth and V. L. Sork Local genetic structure in a North American epiphytic lichen, Ramalina menziesii (Ramalinaceae) Am. J. Botany, May 1, 2008; 95(5): 568 - 576. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. J. Amaral, H.-J. Megens, R. P. M. A. Crooijmans, H. C. M. Heuven, and M. A. M. Groenen Linkage Disequilibrium Decay and Haplotype Block Structure in the Pig Genetics, May 1, 2008; 179(1): 569 - 579. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. M. Vargas, F. C. F. Araujo, D. S. Monteiro, S. C. Estima, A. P. Almeida, L. S. Soares, and F. R. Santos Genetic Diversity and Origin of Leatherback Turtles (Dermochelys coriacea) from the Brazilian Coast J. Hered., March 1, 2008; 99(2): 215 - 220. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Moreno-Estrada, F. Casals, A. Ramirez-Soriano, B. Oliva, F. Calafell, J. Bertranpetit, and E. Bosch Signatures of Selection in the Human Olfactory Receptor OR5I1 Gene Mol. Biol. Evol., January 1, 2008; 25(1): 144 - 154. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Kilian, H. Ozkan, A. Walther, J. Kohl, T. Dagan, F. Salamini, and W. Martin Molecular Diversity at 18 Loci in 321 Wild and 92 Domesticate Lines Reveal No Reduction of Nucleotide Diversity during Triticum monococcum (Einkorn) Domestication: Implications for the Origin of Agriculture Mol. Biol. Evol., December 1, 2007; 24(12): 2657 - 2668. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. C. S. Ramos, J. P. Lemos-Filho, R. A. Ribeiro, F. R. Santos, and M. B. Lovato Phylogeography of the Tree Hymenaea stigonocarpa (Fabaceae: Caesalpinioideae) and the Influence of Quaternary Climate Changes in the Brazilian Cerrado Ann. Bot., November 1, 2007; 100(6): 1219 - 1228. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Mona, M. Tommaseo-Ponzetta, S. Brauer, H. Sudoyo, S. Marzuki, and M. Kayser Patterns of Y-Chromosome Diversity Intersect with the Trans-New Guinea Hypothesis Mol. Biol. Evol., November 1, 2007; 24(11): 2546 - 2555. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. Joly, M. I. Stevens, and B. J. van Vuuren Haplotype Networks Can Be Misleading in the Presence of Missing Data Syst Biol, October 1, 2007; 56(5): 857 - 862. [Full Text] [PDF]
|
|
|
|
|
|
S. A. Tishkoff, M. K. Gonder, B. M. Henn, H. Mortensen, A. Knight, C. Gignoux, N. Fernandopulle, G. Lema, T. B. Nyambo, U. Ramakrishnan, et al. History of Click-Speaking Populations of Africa Inferred from mtDNA and Y Chromosome Genetic Variation Mol. Biol. Evol., October 1, 2007; 24(10): 2180 - 2195. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Larson, U. Albarella, K. Dobney, P. Rowley-Conwy, J. Schibler, A. Tresset, J.-D. Vigne, C. J. Edwards, A. Schlumbaum, A. Dinu, et al. From the Cover: Ancient DNA, pig domestication, and the spread of the Neolithic into Europe PNAS, September 25, 2007; 104(39): 15276 - 15281. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Couceiro, R. Barreiro, J. M. Ruiz, and E. E. Sotka Genetic Isolation by Distance among Populations of the Netted Dog Whelk Nassarius reticulatus (L.) along the European Atlantic Coastline J. Hered., September 1, 2007; 98(6): 603 - 610. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 W.-J. Chen, F. Delmotte, S. R. Cervera, L. Douence, C. Greif, and M.-F. Corio-Costet At Least Two Origins of Fungicide Resistance in Grapevine Downy Mildew Populations Appl. Envir. Microbiol., August 15, 2007; 73(16): 5162 - 5172. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Martinkova, R. A McDonald, and J. B Searle Stoats (Mustela erminea) provide evidence of natural overland colonization of Ireland Proc R Soc B, June 7, 2007; 274(1616): 1387 - 1393. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Cruciani, R. La Fratta, B. Trombetta, P. Santolamazza, D. Sellitto, E. B. Colomb, J.-M. Dugoujon, F. Crivellaro, T. Benincasa, R. Pascone, et al. Tracing Past Human Male Movements in Northern/Eastern Africa and Western Eurasia: New Clues from Y-Chromosomal Haplogroups E-M78 and J-M12 Mol. Biol. Evol., June 1, 2007; 24(6): 1300 - 1311. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Caputi, N. Andreakis, F. Mastrototaro, P. Cirino, M. Vassillo, and P. Sordino Cryptic speciation in a model invertebrate chordate PNAS, May 29, 2007; 104(22): 9364 - 9369. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. W. Carter Mitochondrial diversity within modern human populations Nucleic Acids Res., May 25, 2007; 35(9): 3039 - 3045. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Hudjashov, T. Kivisild, P. A. Underhill, P. Endicott, J. J. Sanchez, A. A. Lin, P. Shen, P. Oefner, C. Renfrew, R. Villems, et al. Revealing the prehistoric settlement of Australia by Y chromosome and mtDNA analysis PNAS, May 22, 2007; 104(21): 8726 - 8730. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R.-K. Bai, S. M. Leal, D. Covarrubias, A. Liu, and L.-J. C. Wong Mitochondrial Genetic Background Modifies Breast Cancer Risk Cancer Res., May 15, 2007; 67(10): 4687 - 4694. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Fernandez, B. Clotet, and M. A. Martinez Fitness Landscape of Human Immunodeficiency Virus Type 1 Protease Quasispecies J. Virol., March 1, 2007; 81(5): 2485 - 2496. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. R. S. Meadows, I. Cemal, O. Karaca, E. Gootwine, and J. W. Kijas Five Ovine Mitochondrial Lineages Identified From Sheep Breeds of the Near East Genetics, March 1, 2007; 175(3): 1371 - 1379. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. K. Gonder, H. M. Mortensen, F. A. Reed, A. de Sousa, and S. A. Tishkoff Whole-mtDNA Genome Sequence Analysis of Ancient African Lineages Mol. Biol. Evol., March 1, 2007; 24(3): 757 - 768. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. A. Jobling, I. C. C. Lo, D. J. Turner, G. R. Bowden, A. C. Lee, Y. Xue, D. Carvalho-Silva, M. E. Hurles, S. M. Adams, Y. M. Chang, et al. Structural variation on the short arm of the human Y chromosome: recurrent multigene deletions encompassing Amelogenin Y Hum. Mol. Genet., February 1, 2007; 16(3): 307 - 316. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Waki, S. Dutta, D. Ray, B. K. Kolli, L. Akman, S.-I. Kawazu, C.-P. Lin, and K.-P. Chang Transmembrane Molecules for Phylogenetic Analyses of Pathogenic Protists: Leishmania-Specific Informative Sites in Hydrophilic Loops of Trans- Endoplasmic Reticulum N-Acetylglucosamine-1-Phosphate Transferase Eukaryot. Cell, February 1, 2007; 6(2): 198 - 210. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
U Roostalu, I Kutuev, E-L Loogvali, E Metspalu, K Tambets, M Reidla, E. Khusnutdinova, E Usanga, T Kivisild, and R Villems Origin and Expansion of Haplogroup H, the Dominant Human Mitochondrial DNA Lineage in West Eurasia: The Near Eastern and Caucasian Perspective Mol. Biol. Evol., February 1, 2007; 24(2): 436 - 448. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Grunewald, K. Forslund, A. Dress, and V. Moulton QNet: An Agglomerative Method for the Construction of Phylogenetic Networks from Weighted Quartets Mol. Biol. Evol., February 1, 2007; 24(2): 532 - 538. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Casado, C. R. Bonvicino, and H. N. Seuanez Phylogeographic Analyses of Callicebus lugens (Platyrrhini, Primates) J. Hered., January 1, 2007; 98(1): 88 - 92. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Frolich, J. Fickel, A. Ludwig, D. Lieckfeldt, W. J. Streich, R. Jurcik, J. Slamecka, and G. Wibbelt NEW VARIANTS OF EUROPEAN BROWN HARE SYNDROME VIRUS STRAINS IN FREE-RANGING EUROPEAN BROWN HARES (LEPUS EUROPAEUS) FROM SLOVAKIA J. Wildl. Dis., January 1, 2007; 43(1): 89 - 96. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B Kilian, H Ozkan, O Deusch, S Effgen, A Brandolini, J Kohl, W Martin, and F Salamini Independent Wheat B and G Genome Origins in Outcrossing Aegilops Progenitor Haplotypes Mol. Biol. Evol., January 1, 2007; 24(1): 217 - 227. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. M Spellman and J. Klicka Testing hypotheses of Pleistocene population history using coalescent simulations: phylogeography of the pygmy nuthatch (Sitta pygmaea) Proc R Soc B, December 22, 2006; 273(1605): 3057 - 3063. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Fraumene, E. M. S. Belle, L. Castri, S. Sanna, G. Mancosu, M. Cosso, F. Marras, G. Barbujani, M. Pirastu, and A. Angius High Resolution Analysis and Phylogenetic Network Construction Using Complete mtDNA Sequences in Sardinian Genetic Isolates Mol. Biol. Evol., November 1, 2006; 23(11): 2101 - 2111. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. A. Bolnick, D. I. Bolnick, and D. G. Smith Asymmetric Male and Female Genetic Histories among Native Americans from Eastern North America Mol. Biol. Evol., November 1, 2006; 23(11): 2161 - 2174. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Barnett, N. Yamaguchi, I. Barnes, and A. Cooper The origin, current diversity and future conservation of the modern lion (Panthera leo) Proc R Soc B, September 7, 2006; 273(1598): 2119 - 2125. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Z. Zhao, N. Yu, Y.-X. Fu, and W.-H. Li Nucleotide Variation and Haplotype Diversity in a 10-kb Noncoding Region in Three Continental Human Populations Genetics, September 1, 2006; 174(1): 399 - 409. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Tapio, N. Marzanov, M. Ozerov, M. Cinkulov, G. Gonzarenko, T. Kiselyova, M. Murawski, H. Viinalass, and J. Kantanen Sheep Mitochondrial DNA Variation in European, Caucasian, and Central Asian Areas Mol. Biol. Evol., September 1, 2006; 23(9): 1776 - 1783. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. M. Morin and B. M. E. Moret NETGEN: generating phylogenetic networks with diploid hybrids Bioinformatics, August 1, 2006; 22(15): 1921 - 1923. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Scheinfeldt, F. Friedlaender, J. Friedlaender, K. Latham, G. Koki, T. Karafet, M. Hammer, and J. Lorenz Unexpected NRY Chromosome Variation in Northern Island Melanesia Mol. Biol. Evol., August 1, 2006; 23(8): 1628 - 1641. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Lehmann, P. L. Marcet, D. H. Graham, E. R. Dahl, and J. P. Dubey From the Cover: Globalization and the population structure of Toxoplasma gondii PNAS, July 25, 2006; 103(30): 11423 - 11428. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Fang and L. Andersson Mitochondrial diversity in European and Chinese pigs is consistent with population expansions that occurred prior to domestication Proc R Soc B, July 22, 2006; 273(1595): 1803 - 1810. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. S. Johnson, W. S. Laegreid, R. J. Basaraba, and D. C. Baker Truncated gamma-glutamyl carboxylase in rambouillet sheep. Vet. Pathol., July 1, 2006; 43(4): 430 - 437. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. E. Pires, L. Ouragh, M. Kalboussi, J. Matos, F. Petrucci-Fonseca, and M. W. Bruford Mitochondrial DNA Sequence Variation in Portuguese Native Dog Breeds: Diversity and Phylogenetic Affinities J. Hered., July 1, 2006; 97(4): 318 - 330. [Abstract] [Full Text] [PDF]
|
|